polyfem Namespace Reference

Namespaces
namespace	assembler
	Used for test only.
namespace	autogen
namespace	basis
namespace	io
namespace	mesh
namespace	problem
namespace	quadrature
namespace	refinement
namespace	renderer
namespace	solver
namespace	time_integrator
namespace	utils

Classes
class	AutoDiffAllocator
class	AutoDiffAllocator< double >
class	BSplineParametrization
class	BSplineParametrization2D
class	BSplineParametrization3D
class	CubicHermiteSplineParametrization
class	IntegrableFunctional
class	LazyCubicInterpolator
class	OptState
	main class that contains the polyfem adjoint solver and all its state More...
class	State
	main class that contains the polyfem solver and all its state More...
class	Units

Typedefs
using	json = nlohmann::json
typedef DScalar1< double, Eigen::Matrix< double, Eigen::Dynamic, 1, 0, 3, 1 > >	AutodiffScalarGrad
typedef DScalar2< double, Eigen::Matrix< double, Eigen::Dynamic, 1, 0, 3, 1 >, Eigen::Matrix< double, Eigen::Dynamic, Eigen::Dynamic, 0, 3, 3 > >	AutodiffScalarHessian
typedef Eigen::Matrix< AutodiffScalarGrad, Eigen::Dynamic, 1, 0, 3, 1 >	AutodiffGradPt
typedef Eigen::Matrix< AutodiffScalarHessian, Eigen::Dynamic, 1, 0, 3, 1 >	AutodiffHessianPt
typedef std::array< double, 2 >	DampingParameters
typedef Eigen::Matrix< double, Eigen::Dynamic, 1, 0, 3, 1 >	VectorNd
typedef Eigen::Matrix< int, Eigen::Dynamic, 1, 0, 3, 1 >	VectorNi
typedef Eigen::Matrix< double, 1, Eigen::Dynamic, Eigen::RowMajor, 1, 3 >	RowVectorNd
typedef Eigen::Matrix< double, Eigen::Dynamic, Eigen::Dynamic, Eigen::ColMajor, 3, 3 >	MatrixNd
typedef Eigen::Matrix< double, Eigen::Dynamic, 1, 0, MAX_QUAD_POINTS, 1 >	QuadratureVector
typedef Eigen::SparseMatrix< double, Eigen::ColMajor >	StiffnessMatrix

Enumerations
enum class	CacheLevel { None , Solution , Derivatives }
enum class	ElasticityTensorType { CAUCHY , PK1 , PK2 , F }

Functions
void	compute_integral_constraints (const Mesh3D &mesh, const int n_bases, const std::vector< basis::ElementBases > &bases, const std::vector< basis::ElementBases > &gbases, Eigen::MatrixXd &basis_integrals)
double	convert_to_lambda (const bool is_volume, const double E, const double nu)
double	convert_to_mu (const double E, const double nu)
Eigen::Matrix2d	d_lambda_mu_d_E_nu (const bool is_volume, const double E, const double nu)
Eigen::Matrix2d	d_E_nu_d_lambda_mu (const bool is_volume, const double lambda, const double mu)
double	convert_to_E (const bool is_volume, const double lambda, const double mu)
double	convert_to_nu (const bool is_volume, const double lambda, const double mu)
Eigen::VectorXd	gradient_from_energy (const int size, const int n_bases, const assembler::NonLinearAssemblerData &data, const std::function< DScalar1< double, Eigen::Matrix< double, 6, 1 > >(const assembler::NonLinearAssemblerData &)> &fun6, const std::function< DScalar1< double, Eigen::Matrix< double, 8, 1 > >(const assembler::NonLinearAssemblerData &)> &fun8, const std::function< DScalar1< double, Eigen::Matrix< double, 12, 1 > >(const assembler::NonLinearAssemblerData &)> &fun12, const std::function< DScalar1< double, Eigen::Matrix< double, 18, 1 > >(const assembler::NonLinearAssemblerData &)> &fun18, const std::function< DScalar1< double, Eigen::Matrix< double, 24, 1 > >(const assembler::NonLinearAssemblerData &)> &fun24, const std::function< DScalar1< double, Eigen::Matrix< double, 30, 1 > >(const assembler::NonLinearAssemblerData &)> &fun30, const std::function< DScalar1< double, Eigen::Matrix< double, 60, 1 > >(const assembler::NonLinearAssemblerData &)> &fun60, const std::function< DScalar1< double, Eigen::Matrix< double, 81, 1 > >(const assembler::NonLinearAssemblerData &)> &fun81, const std::function< DScalar1< double, Eigen::Matrix< double, Eigen::Dynamic, 1, 0, SMALL_N, 1 > >(const assembler::NonLinearAssemblerData &)> &funN, const std::function< DScalar1< double, Eigen::Matrix< double, Eigen::Dynamic, 1, 0, BIG_N, 1 > >(const assembler::NonLinearAssemblerData &)> &funBigN, const std::function< DScalar1< double, Eigen::VectorXd >(const assembler::NonLinearAssemblerData &)> &funn)
Eigen::MatrixXd	hessian_from_energy (const int size, const int n_bases, const assembler::NonLinearAssemblerData &data, const std::function< DScalar2< double, Eigen::Matrix< double, 6, 1 >, Eigen::Matrix< double, 6, 6 > >(const assembler::NonLinearAssemblerData &)> &fun6, const std::function< DScalar2< double, Eigen::Matrix< double, 8, 1 >, Eigen::Matrix< double, 8, 8 > >(const assembler::NonLinearAssemblerData &)> &fun8, const std::function< DScalar2< double, Eigen::Matrix< double, 12, 1 >, Eigen::Matrix< double, 12, 12 > >(const assembler::NonLinearAssemblerData &)> &fun12, const std::function< DScalar2< double, Eigen::Matrix< double, 18, 1 >, Eigen::Matrix< double, 18, 18 > >(const assembler::NonLinearAssemblerData &)> &fun18, const std::function< DScalar2< double, Eigen::Matrix< double, 24, 1 >, Eigen::Matrix< double, 24, 24 > >(const assembler::NonLinearAssemblerData &)> &fun24, const std::function< DScalar2< double, Eigen::Matrix< double, 30, 1 >, Eigen::Matrix< double, 30, 30 > >(const assembler::NonLinearAssemblerData &)> &fun30, const std::function< DScalar2< double, Eigen::Matrix< double, 60, 1 >, Eigen::Matrix< double, 60, 60 > >(const assembler::NonLinearAssemblerData &)> &fun60, const std::function< DScalar2< double, Eigen::Matrix< double, 81, 1 >, Eigen::Matrix< double, 81, 81 > >(const assembler::NonLinearAssemblerData &)> &fun81, const std::function< DScalar2< double, Eigen::Matrix< double, Eigen::Dynamic, 1, 0, SMALL_N, 1 >, Eigen::Matrix< double, Eigen::Dynamic, Eigen::Dynamic, 0, SMALL_N, SMALL_N > >(const assembler::NonLinearAssemblerData &)> &funN, const std::function< DScalar2< double, Eigen::VectorXd, Eigen::MatrixXd >(const assembler::NonLinearAssemblerData &)> &funn)
void	compute_diplacement_grad (const int size, const ElementAssemblyValues &vals, const Eigen::MatrixXd &local_pts, const int p, const Eigen::MatrixXd &displacement, Eigen::MatrixXd &displacement_grad)
void	compute_diplacement_grad (const int size, const ElementBases &bs, const ElementAssemblyValues &vals, const Eigen::MatrixXd &local_pts, const int p, const Eigen::MatrixXd &displacement, Eigen::MatrixXd &displacement_grad)
double	von_mises_stress_for_stress_tensor (const Eigen::MatrixXd &stress)
Eigen::MatrixXd	pk1_from_cauchy (const Eigen::MatrixXd &stress, const Eigen::MatrixXd &F)
Eigen::MatrixXd	pk2_from_cauchy (const Eigen::MatrixXd &stress, const Eigen::MatrixXd &F)
Eigen::VectorXd	gradient_from_energy (const int size, const int n_bases, const assembler::NonLinearAssemblerData &data, const std::function< DScalar1< double, Eigen::Matrix< double, 6, 1 > >(const assembler::NonLinearAssemblerData &)> &fun6, const std::function< DScalar1< double, Eigen::Matrix< double, 8, 1 > >(const assembler::NonLinearAssemblerData &)> &fun8, const std::function< DScalar1< double, Eigen::Matrix< double, 12, 1 > >(const assembler::NonLinearAssemblerData &)> &fun12, const std::function< DScalar1< double, Eigen::Matrix< double, 18, 1 > >(const assembler::NonLinearAssemblerData &)> &fun18, const std::function< DScalar1< double, Eigen::Matrix< double, 24, 1 > >(const assembler::NonLinearAssemblerData &)> &fun24, const std::function< DScalar1< double, Eigen::Matrix< double, 30, 1 > >(const assembler::NonLinearAssemblerData &)> &fun30, const std::function< DScalar1< double, Eigen::Matrix< double, 60, 1 > >(const assembler::NonLinearAssemblerData &)> &fun60, const std::function< DScalar1< double, Eigen::Matrix< double, 81, 1 > >(const assembler::NonLinearAssemblerData &)> &fun81, const std::function< DScalar1< double, Eigen::Matrix< double, Eigen::Dynamic, 1, 0, SMALL_N, 1 > >(const assembler::NonLinearAssemblerData &)> &funN, const std::function< DScalar1< double, Eigen::Matrix< double, Eigen::Dynamic, 1, 0, 1000, 1 > >(const assembler::NonLinearAssemblerData &)> &funBigN, const std::function< DScalar1< double, Eigen::VectorXd >(const assembler::NonLinearAssemblerData &)> &funn)
template<typename AutoDiffVect >
void	get_local_disp (const assembler::NonLinearAssemblerData &data, const int size, AutoDiffVect &local_disp)
template<typename AutoDiffVect , typename AutoDiffGradMat >
void	compute_disp_grad_at_quad (const assembler::NonLinearAssemblerData &data, const AutoDiffVect &local_disp, const int p, const int size, AutoDiffGradMat &def_grad)
template<typename AutoDiffGradMat >
AutoDiffGradMat::Scalar	first_invariant (const AutoDiffGradMat &B)
template<typename AutoDiffGradMat >
AutoDiffGradMat::Scalar	second_invariant (const AutoDiffGradMat &B)
template<typename AutoDiffGradMat >
AutoDiffGradMat::Scalar	third_invariant (const AutoDiffGradMat &B)
spdlog::logger &	adjoint_logger ()
	Retrieves the current logger for adjoint.
spdlog::logger &	logger ()
	Retrieves the current logger.
void	set_logger (std::shared_ptr< spdlog::logger > logger)
	Setup a logger object to be used by Polyfem.
void	set_adjoint_logger (std::shared_ptr< spdlog::logger > logger)
	Setup a logger object to be used by adjoint Polyfem.
void	log_and_throw_error (const std::string &msg)
void	log_and_throw_adjoint_error (const std::string &msg)
template<typename... Args>
void	log_and_throw_error (const std::string &msg, const Args &...args)
template<typename... Args>
void	log_and_throw_adjoint_error (const std::string &msg, const Args &...args)

Variables
constexpr int	SMALL_N = POLYFEM_SMALL_N
constexpr int	BIG_N = POLYFEM_BIG_N

Typedef Documentation

AutodiffGradPt

typedef Eigen::Matrix<AutodiffScalarGrad, Eigen::Dynamic, 1, 0, 3, 1> polyfem::AutodiffGradPt

Definition at line 13 of file AutodiffTypes.hpp.

AutodiffHessianPt

typedef Eigen::Matrix<AutodiffScalarHessian, Eigen::Dynamic, 1, 0, 3, 1> polyfem::AutodiffHessianPt

Definition at line 14 of file AutodiffTypes.hpp.

AutodiffScalarGrad

typedef DScalar1<double, Eigen::Matrix<double, Eigen::Dynamic, 1, 0, 3, 1> > polyfem::AutodiffScalarGrad

Definition at line 10 of file AutodiffTypes.hpp.

AutodiffScalarHessian

typedef DScalar2<double, Eigen::Matrix<double, Eigen::Dynamic, 1, 0, 3, 1>, Eigen::Matrix<double, Eigen::Dynamic, Eigen::Dynamic, 0, 3, 3> > polyfem::AutodiffScalarHessian

Definition at line 11 of file AutodiffTypes.hpp.

DampingParameters

typedef std::array<double, 2> polyfem::DampingParameters

Definition at line 68 of file ElasticityUtils.hpp.

json

using polyfem::json = typedef nlohmann::json

Definition at line 9 of file Common.hpp.

MatrixNd

typedef Eigen::Matrix<double, Eigen::Dynamic, Eigen::Dynamic, Eigen::ColMajor, 3, 3> polyfem::MatrixNd

Definition at line 14 of file Types.hpp.

QuadratureVector

typedef Eigen::Matrix<double, Eigen::Dynamic, 1, 0, MAX_QUAD_POINTS, 1> polyfem::QuadratureVector

Definition at line 17 of file Types.hpp.

RowVectorNd

typedef Eigen::Matrix<double, 1, Eigen::Dynamic, Eigen::RowMajor, 1, 3> polyfem::RowVectorNd

Definition at line 13 of file Types.hpp.

StiffnessMatrix

typedef Eigen::SparseMatrix<double, Eigen::ColMajor> polyfem::StiffnessMatrix

Definition at line 22 of file Types.hpp.

VectorNd

typedef Eigen::Matrix<double, Eigen::Dynamic, 1, 0, 3, 1> polyfem::VectorNd

Definition at line 11 of file Types.hpp.

VectorNi

typedef Eigen::Matrix<int, Eigen::Dynamic, 1, 0, 3, 1> polyfem::VectorNi

Definition at line 12 of file Types.hpp.

Enumeration Type Documentation

CacheLevel

enum class polyfem::CacheLevel

strong

Enumerator
None
Solution
Derivatives

Definition at line 70 of file State.hpp.

ElasticityTensorType

enum class polyfem::ElasticityTensorType

strong

Enumerator
CAUCHY
PK1
PK2
F

Definition at line 21 of file ElasticityUtils.hpp.

Function Documentation

adjoint_logger()

spdlog::logger & polyfem::adjoint_logger

(

)

Retrieves the current logger for adjoint.

Returns

A const reference to Polyfem's logger object.

Definition at line 28 of file Logger.cpp.

Referenced by polyfem::solver::AdjointNLProblem::after_line_search_custom_operation(), polyfem::mesh::apply_slim(), polyfem::OptState::create_states(), polyfem::solver::AdjointNLProblem::gradient(), polyfem::OptState::init(), polyfem::OptState::init_logger(), polyfem::solver::AMIPSForm::is_step_valid(), polyfem::solver::AdjointNLProblem::is_step_valid(), log_and_throw_adjoint_error(), polyfem::solver::AdjointOptUtils::make_nl_solver(), polyfem::solver::CollisionBarrierForm::max_step_size(), polyfem::solver::AdjointNLProblem::save_to_file(), polyfem::OptState::set_log_level(), polyfem::solver::TargetForm::set_reference(), polyfem::solver::AdjointNLProblem::solve_pde(), polyfem::State::solve_static_adjoint(), polyfem::State::solve_transient_adjoint(), and polyfem::solver::AdjointForm::value().

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compute_diplacement_grad() [1/2]

void polyfem::compute_diplacement_grad	(	const int	size,
		const ElementAssemblyValues &	vals,
		const Eigen::MatrixXd &	local_pts,
		const int	p,
		const Eigen::MatrixXd &	displacement,
		Eigen::MatrixXd &	displacement_grad
	)

Definition at line 276 of file ElasticityUtils.cpp.

References polyfem::assembler::ElementAssemblyValues::basis_values, polyfem::assembler::ElementAssemblyValues::jac_it, and vals.

Referenced by polyfem::assembler::FixedCorotational::assign_stress_tensor(), polyfem::assembler::HookeLinearElasticity::assign_stress_tensor(), polyfem::assembler::IncompressibleLinearElasticityDispacement::assign_stress_tensor(), polyfem::assembler::LinearElasticity::assign_stress_tensor(), polyfem::assembler::MooneyRivlin3ParamSymbolic::assign_stress_tensor(), polyfem::assembler::NeoHookeanElasticity::assign_stress_tensor(), polyfem::assembler::SaintVenantElasticity::assign_stress_tensor(), polyfem::assembler::NeoHookeanElasticity::compute_stiffness_value(), and polyfem::assembler::GenericElastic< AMIPSEnergyAutodiff >::compute_stress_grad_multiply_vect().

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compute_diplacement_grad() [2/2]

void polyfem::compute_diplacement_grad	(	const int	size,
		const ElementBases &	bs,
		const ElementAssemblyValues &	vals,
		const Eigen::MatrixXd &	local_pts,
		const int	p,
		const Eigen::MatrixXd &	displacement,
		Eigen::MatrixXd &	displacement_grad
	)

Definition at line 301 of file ElasticityUtils.cpp.

References polyfem::basis::ElementBases::bases, polyfem::assembler::ElementAssemblyValues::basis_values, polyfem::basis::Basis::global(), polyfem::assembler::ElementAssemblyValues::jac_it, and vals.

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compute_disp_grad_at_quad()

template<typename AutoDiffVect , typename AutoDiffGradMat >

void polyfem::compute_disp_grad_at_quad	(	const assembler::NonLinearAssemblerData &	data,
		const AutoDiffVect &	local_disp,
		const int	p,
		const int	size,
		AutoDiffGradMat &	def_grad
	)

Definition at line 106 of file ElasticityUtils.hpp.

References polyfem::assembler::ElementAssemblyValues::basis_values, polyfem::assembler::ElementAssemblyValues::jac_it, and polyfem::assembler::NonLinearAssemblerData::vals.

Referenced by polyfem::assembler::FixedCorotational::compute_energy_aux(), polyfem::assembler::GenericElastic< Derived >::compute_energy_aux(), polyfem::assembler::HookeLinearElasticity::compute_energy_aux(), polyfem::assembler::LinearElasticity::compute_energy_aux(), polyfem::assembler::MooneyRivlin3ParamSymbolic::compute_energy_aux(), polyfem::assembler::NeoHookeanElasticity::compute_energy_aux(), and polyfem::assembler::SaintVenantElasticity::compute_energy_aux().

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compute_integral_constraints()

void polyfem::compute_integral_constraints	(	const Mesh3D &	mesh,
		const int	n_bases,
		const std::vector< basis::ElementBases > &	bases,
		const std::vector< basis::ElementBases > &	gbases,
		Eigen::MatrixXd &	basis_integrals
	)

Definition at line 404 of file State.cpp.

References polyfem::assembler::ElementAssemblyValues::basis_values, polyfem::assembler::ElementAssemblyValues::compute(), polyfem::assembler::ElementAssemblyValues::det, polyfem::assembler::AssemblyValues::global, polyfem::assembler::AssemblyValues::grad_t_m, polyfem::mesh::Mesh3D::is_volume(), logger(), polyfem::mesh::Mesh::n_elements(), polyfem::assembler::ElementAssemblyValues::quadrature, polyfem::assembler::AssemblyValues::val, polyfem::assembler::ElementAssemblyValues::val, vals, and polyfem::quadrature::Quadrature::weights.

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convert_to_E()

double polyfem::convert_to_E	(	const bool	is_volume,
		const double	lambda,
		const double	mu
	)

Definition at line 65 of file ElasticityUtils.cpp.

Referenced by polyfem::solver::ENu2LambdaMu::inverse_eval().

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convert_to_lambda()

double polyfem::convert_to_lambda	(	const bool	is_volume,
		const double	E,
		const double	nu
	)

Definition at line 12 of file ElasticityUtils.cpp.

Referenced by polyfem::solver::ENu2LambdaMu::eval(), and polyfem::assembler::LameParameters::lambda_mu().

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convert_to_mu()

double polyfem::convert_to_mu	(	const double	E,
		const double	nu
	)

Definition at line 20 of file ElasticityUtils.cpp.

Referenced by polyfem::solver::ENu2LambdaMu::eval(), and polyfem::assembler::LameParameters::lambda_mu().

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convert_to_nu()

double polyfem::convert_to_nu	(	const bool	is_volume,
		const double	lambda,
		const double	mu
	)

Definition at line 73 of file ElasticityUtils.cpp.

Referenced by polyfem::solver::ENu2LambdaMu::inverse_eval().

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d_E_nu_d_lambda_mu()

Eigen::Matrix2d polyfem::d_E_nu_d_lambda_mu	(	const bool	is_volume,
		const double	lambda,
		const double	mu
	)

Definition at line 44 of file ElasticityUtils.cpp.

d_lambda_mu_d_E_nu()

Eigen::Matrix2d polyfem::d_lambda_mu_d_E_nu	(	const bool	is_volume,
		const double	E,
		const double	nu
	)

Definition at line 25 of file ElasticityUtils.cpp.

Referenced by polyfem::solver::ENu2LambdaMu::apply_jacobian().

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first_invariant()

template<typename AutoDiffGradMat >

AutoDiffGradMat::Scalar polyfem::first_invariant

(

const AutoDiffGradMat &

B

)

Definition at line 140 of file ElasticityUtils.hpp.

Referenced by polyfem::assembler::MooneyRivlinElasticity::elastic_energy(), and polyfem::assembler::MooneyRivlin3ParamSymbolic::elastic_energy().

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get_local_disp()

template<typename AutoDiffVect >

void polyfem::get_local_disp	(	const assembler::NonLinearAssemblerData &	data,
		const int	size,
		AutoDiffVect &	local_disp
	)

Definition at line 71 of file ElasticityUtils.hpp.

References polyfem::assembler::ElementAssemblyValues::basis_values, DiffScalarBase::setVariableCount(), polyfem::assembler::NonLinearAssemblerData::vals, and polyfem::assembler::NonLinearAssemblerData::x.

Referenced by polyfem::assembler::AMIPSEnergy::compute_energy_aux(), polyfem::assembler::FixedCorotational::compute_energy_aux(), polyfem::assembler::GenericElastic< Derived >::compute_energy_aux(), polyfem::assembler::HookeLinearElasticity::compute_energy_aux(), polyfem::assembler::LinearElasticity::compute_energy_aux(), polyfem::assembler::MooneyRivlin3ParamSymbolic::compute_energy_aux(), polyfem::assembler::NeoHookeanElasticity::compute_energy_aux(), and polyfem::assembler::SaintVenantElasticity::compute_energy_aux().

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gradient_from_energy() [1/2]

Eigen::VectorXd polyfem::gradient_from_energy	(	const int	size,
		const int	n_bases,
		const assembler::NonLinearAssemblerData &	data,
		const std::function< DScalar1< double, Eigen::Matrix< double, 6, 1 > >(const assembler::NonLinearAssemblerData &)> &	fun6,
		const std::function< DScalar1< double, Eigen::Matrix< double, 8, 1 > >(const assembler::NonLinearAssemblerData &)> &	fun8,
		const std::function< DScalar1< double, Eigen::Matrix< double, 12, 1 > >(const assembler::NonLinearAssemblerData &)> &	fun12,
		const std::function< DScalar1< double, Eigen::Matrix< double, 18, 1 > >(const assembler::NonLinearAssemblerData &)> &	fun18,
		const std::function< DScalar1< double, Eigen::Matrix< double, 24, 1 > >(const assembler::NonLinearAssemblerData &)> &	fun24,
		const std::function< DScalar1< double, Eigen::Matrix< double, 30, 1 > >(const assembler::NonLinearAssemblerData &)> &	fun30,
		const std::function< DScalar1< double, Eigen::Matrix< double, 60, 1 > >(const assembler::NonLinearAssemblerData &)> &	fun60,
		const std::function< DScalar1< double, Eigen::Matrix< double, 81, 1 > >(const assembler::NonLinearAssemblerData &)> &	fun81,
		const std::function< DScalar1< double, Eigen::Matrix< double, Eigen::Dynamic, 1, 0, SMALL_N, 1 > >(const assembler::NonLinearAssemblerData &)> &	funN,
		const std::function< DScalar1< double, Eigen::Matrix< double, Eigen::Dynamic, 1, 0, 1000, 1 > >(const assembler::NonLinearAssemblerData &)> &	funBigN,
		const std::function< DScalar1< double, Eigen::VectorXd >(const assembler::NonLinearAssemblerData &)> &	funn
	)

gradient_from_energy() [2/2]

Eigen::VectorXd polyfem::gradient_from_energy	(	const int	size,
		const int	n_bases,
		const assembler::NonLinearAssemblerData &	data,
		const std::function< DScalar1< double, Eigen::Matrix< double, 6, 1 > >(const assembler::NonLinearAssemblerData &)> &	fun6,
		const std::function< DScalar1< double, Eigen::Matrix< double, 8, 1 > >(const assembler::NonLinearAssemblerData &)> &	fun8,
		const std::function< DScalar1< double, Eigen::Matrix< double, 12, 1 > >(const assembler::NonLinearAssemblerData &)> &	fun12,
		const std::function< DScalar1< double, Eigen::Matrix< double, 18, 1 > >(const assembler::NonLinearAssemblerData &)> &	fun18,
		const std::function< DScalar1< double, Eigen::Matrix< double, 24, 1 > >(const assembler::NonLinearAssemblerData &)> &	fun24,
		const std::function< DScalar1< double, Eigen::Matrix< double, 30, 1 > >(const assembler::NonLinearAssemblerData &)> &	fun30,
		const std::function< DScalar1< double, Eigen::Matrix< double, 60, 1 > >(const assembler::NonLinearAssemblerData &)> &	fun60,
		const std::function< DScalar1< double, Eigen::Matrix< double, 81, 1 > >(const assembler::NonLinearAssemblerData &)> &	fun81,
		const std::function< DScalar1< double, Eigen::Matrix< double, Eigen::Dynamic, 1, 0, SMALL_N, 1 > >(const assembler::NonLinearAssemblerData &)> &	funN,
		const std::function< DScalar1< double, Eigen::Matrix< double, Eigen::Dynamic, 1, 0, BIG_N, 1 > >(const assembler::NonLinearAssemblerData &)> &	funBigN,
		const std::function< DScalar1< double, Eigen::VectorXd >(const assembler::NonLinearAssemblerData &)> &	funn
	)

Definition at line 81 of file ElasticityUtils.cpp.

References BIG_N, logger(), and SMALL_N.

Referenced by polyfem::assembler::GenericElastic< Derived >::assemble_gradient(), polyfem::assembler::HookeLinearElasticity::assemble_gradient(), polyfem::assembler::LinearElasticity::assemble_gradient(), and polyfem::assembler::SaintVenantElasticity::assemble_gradient().

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hessian_from_energy()

Eigen::MatrixXd polyfem::hessian_from_energy	(	const int	size,
		const int	n_bases,
		const assembler::NonLinearAssemblerData &	data,
		const std::function< DScalar2< double, Eigen::Matrix< double, 6, 1 >, Eigen::Matrix< double, 6, 6 > >(const assembler::NonLinearAssemblerData &)> &	fun6,
		const std::function< DScalar2< double, Eigen::Matrix< double, 8, 1 >, Eigen::Matrix< double, 8, 8 > >(const assembler::NonLinearAssemblerData &)> &	fun8,
		const std::function< DScalar2< double, Eigen::Matrix< double, 12, 1 >, Eigen::Matrix< double, 12, 12 > >(const assembler::NonLinearAssemblerData &)> &	fun12,
		const std::function< DScalar2< double, Eigen::Matrix< double, 18, 1 >, Eigen::Matrix< double, 18, 18 > >(const assembler::NonLinearAssemblerData &)> &	fun18,
		const std::function< DScalar2< double, Eigen::Matrix< double, 24, 1 >, Eigen::Matrix< double, 24, 24 > >(const assembler::NonLinearAssemblerData &)> &	fun24,
		const std::function< DScalar2< double, Eigen::Matrix< double, 30, 1 >, Eigen::Matrix< double, 30, 30 > >(const assembler::NonLinearAssemblerData &)> &	fun30,
		const std::function< DScalar2< double, Eigen::Matrix< double, 60, 1 >, Eigen::Matrix< double, 60, 60 > >(const assembler::NonLinearAssemblerData &)> &	fun60,
		const std::function< DScalar2< double, Eigen::Matrix< double, 81, 1 >, Eigen::Matrix< double, 81, 81 > >(const assembler::NonLinearAssemblerData &)> &	fun81,
		const std::function< DScalar2< double, Eigen::Matrix< double, Eigen::Dynamic, 1, 0, SMALL_N, 1 >, Eigen::Matrix< double, Eigen::Dynamic, Eigen::Dynamic, 0, SMALL_N, SMALL_N > >(const assembler::NonLinearAssemblerData &)> &	funN,
		const std::function< DScalar2< double, Eigen::VectorXd, Eigen::MatrixXd >(const assembler::NonLinearAssemblerData &)> &	funn
	)

Definition at line 180 of file ElasticityUtils.cpp.

References logger(), and SMALL_N.

Referenced by polyfem::assembler::GenericElastic< Derived >::assemble_hessian(), polyfem::assembler::HookeLinearElasticity::assemble_hessian(), polyfem::assembler::LinearElasticity::assemble_hessian(), and polyfem::assembler::SaintVenantElasticity::assemble_hessian().

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log_and_throw_adjoint_error() [1/2]

void polyfem::log_and_throw_adjoint_error

(

const std::string &

msg

)

Definition at line 77 of file Logger.cpp.

References adjoint_logger().

Referenced by polyfem::solver::AdjointNLProblem::after_line_search_custom_operation(), polyfem::solver::ProxyContactForceForm::build_collision_mesh(), polyfem::solver::MaxStressForm::compute_adjoint_rhs_step(), polyfem::solver::FrictionCoeffientVariableToSimulation::compute_adjoint_term(), polyfem::solver::DampingCoeffientVariableToSimulation::compute_adjoint_term(), polyfem::solver::InitialConditionVariableToSimulation::compute_adjoint_term(), polyfem::solver::DirichletVariableToSimulation::compute_adjoint_term(), polyfem::assembler::Assembler::compute_dstress_dmu_dlambda(), polyfem::State::compute_force_jacobian(), polyfem::solver::MinJacobianForm::compute_partial_gradient(), polyfem::solver::MaxStressForm::compute_partial_gradient_step(), polyfem::solver::ElasticEnergyForm::compute_partial_gradient_step(), polyfem::solver::StressNormForm::compute_partial_gradient_step(), polyfem::solver::StressForm::compute_partial_gradient_step(), polyfem::solver::NodeTargetForm::compute_partial_gradient_step(), polyfem::assembler::Assembler::compute_stress_grad(), polyfem::assembler::Assembler::compute_stress_grad_multiply_mat(), polyfem::assembler::Assembler::compute_stress_prev_grad(), polyfem::solver::AdjointOptUtils::compute_variable_size(), polyfem::solver::VariableToSimulation::create(), polyfem::solver::AdjointOptUtils::create_form(), polyfem::solver::AdjointOptUtils::create_parametrization(), polyfem::solver::AdjointOptUtils::create_simple_form(), polyfem::solver::AdjointOptUtils::create_states(), polyfem::solver::DeformedCollisionBarrierForm::DeformedCollisionBarrierForm(), polyfem::solver::AdjointForm::first_derivative_unweighted(), polyfem::State::get_adjoint_mat(), polyfem::solver::ElasticEnergyForm::get_integral_functional(), polyfem::solver::ComplianceForm::get_integral_functional(), polyfem::solver::AccelerationForm::get_integral_functional(), polyfem::solver::KineticForm::get_integral_functional(), polyfem::solver::StressForm::get_integral_functional(), polyfem::solver::TargetForm::get_integral_functional(), polyfem::solver::VariableToSimulation::get_output_indexing(), polyfem::solver::AdjointNLProblem::hessian(), polyfem::solver::SolveData::init_forms(), polyfem::solver::InsertConstantMap::InsertConstantMap(), polyfem::solver::VariableToSimulation::inverse_eval(), polyfem::solver::ShapeVariableToSimulation::inverse_eval(), polyfem::solver::ElasticVariableToSimulation::inverse_eval(), polyfem::solver::FrictionCoeffientVariableToSimulation::inverse_eval(), polyfem::solver::DampingCoeffientVariableToSimulation::inverse_eval(), polyfem::solver::DirichletVariableToSimulation::inverse_eval(), polyfem::solver::PressureVariableToSimulation::inverse_eval(), polyfem::solver::Parametrization::inverse_eval(), polyfem::solver::SliceMap::inverse_eval(), polyfem::solver::PeriodicMeshToMesh::inverse_eval(), polyfem::solver::AdjointOptUtils::make_nl_solver(), polyfem::solver::NodeTargetForm::NodeTargetForm(), polyfem::solver::PerBody2PerNode::PerBody2PerNode(), polyfem::solver::AdjointForm::second_derivative_unweighted(), polyfem::solver::VariableToSimulation::set_output_indexing(), polyfem::solver::SliceMap::SliceMap(), polyfem::State::solve_transient_adjoint(), polyfem::State::solve_transient_linear(), polyfem::solver::VariableToSimulation::update_state(), polyfem::solver::InitialConditionVariableToSimulation::update_state(), and polyfem::solver::VariableToBoundaryNodesExclusive::VariableToBoundaryNodesExclusive().

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log_and_throw_adjoint_error() [2/2]

template<typename... Args>

void polyfem::log_and_throw_adjoint_error	(	const std::string &	msg,
		const Args &...	args
	)

Definition at line 50 of file Logger.hpp.

References log_and_throw_error().

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log_and_throw_error() [1/2]

void polyfem::log_and_throw_error

(

const std::string &

msg

)

Definition at line 71 of file Logger.cpp.

References logger().

Referenced by polyfem::mesh::Obstacle::append_mesh(), polyfem::utils::apply_common_params(), polyfem::assembler::Assembler::assemble(), polyfem::assembler::Assembler::assemble_energy(), polyfem::assembler::Assembler::assemble_energy_per_element(), polyfem::assembler::Assembler::assemble_gradient(), polyfem::assembler::Assembler::assemble_hessian(), polyfem::time_integrator::BDF::BDF(), polyfem::BSplineParametrization2D::BSplineParametrization2D(), polyfem::BSplineParametrization3D::BSplineParametrization3D(), polyfem::utils::Selection::build(), polyfem::utils::Interpolation::build(), polyfem::State::build_basis(), polyfem::mesh::build_collision_proxy(), polyfem::mesh::build_collision_proxy_displacement_map(), polyfem::State::build_periodic_collision_mesh(), polyfem::utils::Selection::build_selections(), polyfem::State::cache_transient_adjoint_quantities(), polyfem::solver::PeriodicShapeVariableToSimulation::compute_adjoint_term(), polyfem::assembler::PressureAssembler::compute_cavity_energy_hess(), polyfem::assembler::Assembler::compute_rhs(), polyfem::assembler::Assembler::compute_stiffness_value(), polyfem::assembler::Assembler::compute_stress_grad_multiply_vect(), polyfem::mesh::construct_affine_transformation(), polyfem::Units::convert(), polyfem::io::OutStatsData::count_flipped_elements(), polyfem::solver::RayleighDampingForm::create(), polyfem::solver::AdjointOptUtils::create_form(), polyfem::solver::BSplineParametrization1DTo2D::eval(), polyfem::solver::BSplineParametrization2DTo3D::eval(), polyfem::solver::BoundedBiharmonicWeights2Dto3D::eval(), polyfem::solver::NLHomoProblem::full_to_reduced(), polyfem::utils::PiecewiseInterpolation::init(), polyfem::mesh::LocalRelaxationData< M >::init_boundary_conditions(), polyfem::State::init_nonlinear_tensor_solve(), polyfem::State::init_time(), polyfem::mesh::WildRemesher< WMTKMesh >::invariants(), polyfem::solver::PeriodicShapeVariableToSimulation::inverse_eval(), polyfem::solver::BoundedBiharmonicWeights2Dto3D::inverse_eval(), polyfem::mesh::irregular_triangle(), polyfem::assembler::Assembler::kernel(), polyfem::State::load_mesh(), log_and_throw_adjoint_error(), log_and_throw_error(), main(), polyfem::assembler::AssemblerUtils::make_assembler(), polyfem::assembler::AssemblerUtils::make_mixed_assembler(), polyfem::solver::ContactForm::max_step_size(), polyfem::solver::TransientNavierStokesSolver::minimize_aux(), polyfem::assembler::GenericTensorProblem::neumann_nodal_value(), polyfem::assembler::GenericScalarProblem::neumann_nodal_value(), polyfem::utils::ExpressionValue::operator()(), polyfem::utils::PeriodicBoundary::PeriodicBoundary(), polyfem::solver::PeriodicMeshToMesh::PeriodicMeshToMesh(), polyfem::mesh::read_fem_geometry(), polyfem::mesh::read_fem_mesh(), polyfem::mesh::read_obstacle_geometry(), polyfem::mesh::read_obstacle_mesh(), polyfem::solver::SDFTargetForm::set_bspline_target(), polyfem::solver::SDFTargetForm::set_bspline_target(), polyfem::assembler::GenericTensorProblem::set_parameters(), polyfem::assembler::GenericScalarProblem::set_parameters(), polyfem::time_integrator::BDF::set_parameters(), polyfem::solver::MeshTargetForm::set_surface_mesh_target(), polyfem::solver::ALSolver::solve_al(), polyfem::State::solve_homogenization(), polyfem::solver::ALSolver::solve_reduced(), polyfem::State::solve_transient_navier_stokes_split(), polyfem::mesh::TetOperationCache::swap_32(), polyfem::mesh::WildRemesher< WMTKMesh >::swap_edges(), and polyfem::assembler::Assembler::update_lame_params().

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log_and_throw_error() [2/2]

template<typename... Args>

void polyfem::log_and_throw_error	(	const std::string &	msg,
		const Args &...	args
	)

Definition at line 44 of file Logger.hpp.

References log_and_throw_error().

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logger()

spdlog::logger & polyfem::logger

(

)

Retrieves the current logger.

Returns

A const reference to Polyfem's logger object.

Definition at line 42 of file Logger.cpp.

Referenced by polyfem::solver::apply_objective_json_spec(), polyfem::solver::AdjointOptUtils::apply_opt_json_spec(), polyfem::mesh::apply_slim(), polyfem::State::assemble_mass_mat(), polyfem::State::assemble_rhs(), polyfem::io::Evaluator::average_grad_based_function(), polyfem::BSplineParametrization2D::BSplineParametrization2D(), polyfem::BSplineParametrization3D::BSplineParametrization3D(), polyfem::State::build_basis(), polyfem::State::build_collision_mesh(), polyfem::io::OutGeometryData::build_grid(), polyfem::io::OutGeometryData::build_high_order_vis_mesh(), polyfem::State::build_node_mapping(), polyfem::State::build_polygonal_basis(), polyfem::State::build_stiffness_mat(), polyfem::io::Evaluator::check_scalar_value(), polyfem::io::OutStatsData::compute_errors(), compute_integral_constraints(), polyfem::io::OutStatsData::compute_mesh_size(), polyfem::io::OutStatsData::compute_mesh_stats(), polyfem::io::Evaluator::compute_scalar_value(), polyfem::io::Evaluator::compute_stress_at_quadrature_points(), polyfem::io::Evaluator::compute_tensor_value(), polyfem::basis::RBFWithQuadratic::compute_weights(), polyfem::basis::RBFWithQuadraticLagrange::compute_weights(), polyfem::basis::RBFWithLinear::compute_weights(), polyfem::time_integrator::ImplicitTimeIntegrator::construct_time_integrator(), polyfem::io::OutStatsData::count_flipped_elements(), polyfem::mesh::Mesh::create(), polyfem::mesh::Mesh::create(), polyfem::CubicHermiteSplineParametrization::CubicHermiteSplineParametrization(), polyfem::mesh::WildRemesher< WMTKMesh >::execute(), polyfem::State::export_data(), polyfem::io::OutGeometryData::export_data(), polyfem::io::OutGeometryData::extract_boundary_mesh(), polyfem::utils::FileSelection::FileSelection(), polyfem::State::formulation(), forward_simulation(), polyfem::utils::SparseMatrixCache::get_matrix(), polyfem::problem::ProblemFactory::get_problem(), gradient_from_energy(), hessian_from_energy(), polyfem::utils::RBFInterpolation::init(), polyfem::State::init(), polyfem::utils::ExpressionValue::init(), polyfem::utils::ExpressionValue::init(), polyfem::State::init_homogenization_solve(), polyfem::State::init_logger(), polyfem::solver::BCLagrangianForm::init_masked_lumped_mass(), polyfem::State::init_time(), polyfem::solver::OperatorSplittingSolver::initialize_hashtable(), polyfem::mesh::instantiate_pattern(), polyfem::io::Evaluator::interpolate_at_local_vals(), polyfem::io::Evaluator::interpolate_at_local_vals(), polyfem::io::Evaluator::interpolate_boundary_function(), polyfem::io::Evaluator::interpolate_function(), polyfem::solver::BoundedBiharmonicWeights2Dto3D::inverse_eval(), polyfem::problem::NodeValues::load(), polyfem::io::MshReader::load(), polyfem::State::load_mesh(), polyfem::State::load_mesh(), polyfem::mesh::PhysicsRemesher< WMTKMesh >::local_relaxation(), log_and_throw_error(), polyfem::utils::Timer::log_msg(), polyfem::mesh::Remesher::log_timings(), polyfem::assembler::RhsAssembler::lsq_bc(), polyfem::State::make_nl_solver(), polyfem::io::Evaluator::mark_flipped_cells(), polyfem::solver::ContactForm::max_step_size(), polyfem::solver::TransientNavierStokesSolver::minimize(), polyfem::solver::NavierStokesSolver::minimize(), polyfem::solver::TransientNavierStokesSolver::minimize_aux(), polyfem::solver::NavierStokesSolver::minimize_aux(), polyfem::mesh::CMesh2D::normalize(), polyfem::mesh::CMesh3D::normalize(), polyfem::utils::ExpressionValue::operator()(), polyfem::solver::OperatorSplittingSolver::OperatorSplittingSolver(), optimization_simulation(), polyfem::mesh::MeshProcessing3D::orient_volume_mesh(), polyfem::refinement::APriori::p_refine(), polyfem::refinement::APriori::p_refine(), polyfem::solver::PerBody2PerElem::PerBody2PerElem(), polyfem::solver::PerBody2PerNode::PerBody2PerNode(), polyfem::solver::ContactForm::post_step(), polyfem::assembler::PressureAssembler::PressureAssembler(), polyfem::io::OBJReader::read(), polyfem::io::OBJReader::read(), polyfem::io::OBJReader::read(), polyfem::mesh::read_fem_mesh(), polyfem::io::read_matrix_ascii(), polyfem::io::read_matrix_binary(), polyfem::mesh::read_surface_mesh(), polyfem::State::save_json(), polyfem::State::save_json(), polyfem::io::OutStatsData::save_json(), polyfem::State::save_timestep(), polyfem::io::OutGeometryData::save_vtu(), polyfem::State::set_log_level(), polyfem::utils::GeogramUtils::set_logger(), polyfem::assembler::Assembler::set_materials(), polyfem::assembler::GenericTensorProblem::set_parameters(), polyfem::utils::ExpressionValue::set_t(), polyfem::utils::show_matrix_stats(), polyfem::mesh::WildRemesher< wmtk::TetMesh >::smooth_vertices(), polyfem::State::sol_to_pressure(), polyfem::State::solve(), polyfem::solver::ALSolver::solve_al(), polyfem::State::solve_homogenization(), polyfem::State::solve_homogenization_step(), polyfem::State::solve_linear(), polyfem::State::solve_linear(), polyfem::State::solve_problem(), polyfem::solver::ALSolver::solve_reduced(), polyfem::State::solve_tensor_nonlinear(), polyfem::State::solve_transient_linear(), polyfem::State::solve_transient_navier_stokes(), polyfem::State::solve_transient_navier_stokes_split(), polyfem::State::solve_transient_tensor_nonlinear(), polyfem::mesh::SizingFieldRemesher< WMTKMesh >::split_edges(), polyfem::mesh::MeshProcessing3D::straight_sweeping(), polyfem::mesh::Navigation::switch_face(), polyfem::assembler::RhsAssembler::time_bc(), polyfem::mesh::unconstrained_L2_projection(), polyfem::solver::ContactForm::update_barrier_stiffness(), polyfem::solver::LaggedRegForm::update_lagging(), polyfem::solver::DampingCoeffientVariableToSimulation::update_state(), polyfem::solver::DirichletVariableToSimulation::update_state(), polyfem::solver::PressureVariableToSimulation::update_state(), polyfem::io::write_matrix(), polyfem::io::write_matrix_ascii(), polyfem::io::write_matrix_binary(), and polyfem::io::write_sparse_matrix_csv().

pk1_from_cauchy()

Eigen::MatrixXd polyfem::pk1_from_cauchy	(	const Eigen::MatrixXd &	stress,
		const Eigen::MatrixXd &	F
	)

Definition at line 349 of file ElasticityUtils.cpp.

References F.

Referenced by polyfem::assembler::FixedCorotational::assign_stress_tensor(), polyfem::assembler::HookeLinearElasticity::assign_stress_tensor(), polyfem::assembler::IncompressibleLinearElasticityDispacement::assign_stress_tensor(), polyfem::assembler::LinearElasticity::assign_stress_tensor(), polyfem::assembler::MooneyRivlin3ParamSymbolic::assign_stress_tensor(), polyfem::assembler::NeoHookeanElasticity::assign_stress_tensor(), polyfem::assembler::SaintVenantElasticity::assign_stress_tensor(), and polyfem::assembler::GenericElastic< AMIPSEnergyAutodiff >::compute_stress_grad_multiply_vect().

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pk2_from_cauchy()

Eigen::MatrixXd polyfem::pk2_from_cauchy	(	const Eigen::MatrixXd &	stress,
		const Eigen::MatrixXd &	F
	)

Definition at line 354 of file ElasticityUtils.cpp.

References F.

Referenced by polyfem::assembler::FixedCorotational::assign_stress_tensor(), polyfem::assembler::HookeLinearElasticity::assign_stress_tensor(), polyfem::assembler::IncompressibleLinearElasticityDispacement::assign_stress_tensor(), polyfem::assembler::LinearElasticity::assign_stress_tensor(), polyfem::assembler::MooneyRivlin3ParamSymbolic::assign_stress_tensor(), polyfem::assembler::NeoHookeanElasticity::assign_stress_tensor(), polyfem::assembler::SaintVenantElasticity::assign_stress_tensor(), and polyfem::assembler::GenericElastic< AMIPSEnergyAutodiff >::compute_stress_grad_multiply_vect().

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second_invariant()

template<typename AutoDiffGradMat >

AutoDiffGradMat::Scalar polyfem::second_invariant

(

const AutoDiffGradMat &

B

)

Definition at line 146 of file ElasticityUtils.hpp.

Referenced by polyfem::assembler::MooneyRivlinElasticity::elastic_energy(), and polyfem::assembler::MooneyRivlin3ParamSymbolic::elastic_energy().

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set_adjoint_logger()

void polyfem::set_adjoint_logger

(

std::shared_ptr< spdlog::logger >

logger

)

Setup a logger object to be used by adjoint Polyfem.

Calling this function with other Polyfem function is not thread-safe.

Parameters

[in]

logger

New logger object to be used by adjoint Polyfem. Ownership is shared with Polyfem.

Definition at line 66 of file Logger.cpp.

Referenced by polyfem::OptState::init_logger().

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set_logger()

void polyfem::set_logger

(

std::shared_ptr< spdlog::logger >

logger

)

Setup a logger object to be used by Polyfem.

Calling this function with other Polyfem function is not thread-safe.

Parameters

[in]

logger

New logger object to be used by Polyfem. Ownership is shared with Polyfem.

Definition at line 60 of file Logger.cpp.

Referenced by polyfem::State::init_logger().

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third_invariant()

template<typename AutoDiffGradMat >

AutoDiffGradMat::Scalar polyfem::third_invariant

(

const AutoDiffGradMat &

B

)

Definition at line 152 of file ElasticityUtils.hpp.

References polyfem::utils::determinant().

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von_mises_stress_for_stress_tensor()

double polyfem::von_mises_stress_for_stress_tensor

(

const Eigen::MatrixXd &

stress

)

Definition at line 328 of file ElasticityUtils.cpp.

Referenced by polyfem::assembler::ElasticityAssembler::compute_von_mises_stresses().

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Variable Documentation

BIG_N

constexpr int polyfem::BIG_N = POLYFEM_BIG_N

constexpr

Definition at line 19 of file ElasticityUtils.hpp.

Referenced by gradient_from_energy().

SMALL_N

constexpr int polyfem::SMALL_N = POLYFEM_SMALL_N

constexpr

Definition at line 18 of file ElasticityUtils.hpp.

Referenced by gradient_from_energy(), and hessian_from_energy().