AssemblerUtils.cpp

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#include "AssemblerUtils.hpp"
 
#include <polyfem/assembler/Bilaplacian.hpp>
#include <polyfem/assembler/Helmholtz.hpp>
#include <polyfem/assembler/HookeLinearElasticity.hpp>
#include <polyfem/assembler/IncompressibleLinElast.hpp>
#include <polyfem/assembler/Laplacian.hpp>
#include <polyfem/assembler/Electrostatics.hpp>
#include <polyfem/assembler/LinearElasticity.hpp>
#include <polyfem/assembler/Mass.hpp>
#include <polyfem/assembler/MooneyRivlinElasticity.hpp>
#include <polyfem/assembler/MooneyRivlin3ParamElasticity.hpp>
#include <polyfem/assembler/MooneyRivlin3ParamSymbolic.hpp>
#include <polyfem/assembler/SumModel.hpp>
#include <polyfem/assembler/AMIPSEnergy.hpp>
#include <polyfem/assembler/MultiModel.hpp>
#include <polyfem/assembler/NavierStokes.hpp>
#include <polyfem/assembler/NeoHookeanElasticity.hpp>
#include <polyfem/assembler/InversionBarrier.hpp>
#include <polyfem/assembler/IsochoricNeoHookean.hpp>
#include <polyfem/assembler/HGOFiber.hpp>
#include <polyfem/assembler/ActiveFiber.hpp>
#include <polyfem/assembler/HGODispersion.hpp>
#include <polyfem/assembler/OgdenElasticity.hpp>
#include <polyfem/assembler/VolumePenalty.hpp>
#include <polyfem/assembler/SaintVenantElasticity.hpp>
#include <polyfem/assembler/Stokes.hpp>
#include <polyfem/assembler/ThermoElasticity.hpp>
#include <polyfem/assembler/ViscousDamping.hpp>
#include <polyfem/assembler/FixedCorotational.hpp>
 
#include <polyfem/utils/JSONUtils.hpp>
#include <polyfem/utils/Logger.hpp>
 
// #include <unsupported/Eigen/SparseExtra>
 
namespace polyfem
{
    using namespace basis;
    using namespace utils;
 
    namespace assembler
    {
 
        std::string AssemblerUtils::other_assembler_name(const std::string &formulation)
        {
            if (formulation == "Bilaplacian")
                return "BilaplacianAux";
            else if (formulation == "Stokes" || formulation == "NavierStokes" || formulation == "NavierStokesFSI" || formulation == "OperatorSplitting")
                return "StokesPressure";
            else if (formulation == "IncompressibleLinearElasticity")
                return "IncompressibleLinearElasticityPressure";
 
            return "";
        }
 
        std::shared_ptr<Assembler> AssemblerUtils::make_assembler(const std::string &formulation)
        {
            if (formulation == "Helmholtz")
                return std::make_shared<Helmholtz>();
            else if (formulation == "Laplacian")
                return std::make_shared<Laplacian>();
            else if (formulation == "Electrostatics")
                return std::make_shared<Electrostatics>();
 
            else if (formulation == "Bilaplacian")
                return std::make_shared<BilaplacianMain>();
            else if (formulation == "BilaplacianAux")
                return std::make_shared<BilaplacianAux>();
 
            else if (formulation == "LinearElasticity")
                return std::make_shared<LinearElasticity>();
            else if (formulation == "HookeLinearElasticity")
                return std::make_shared<HookeLinearElasticity>();
            else if (formulation == "IncompressibleLinearElasticity")
                return std::make_shared<IncompressibleLinearElasticityDispacement>();
            else if (formulation == "IncompressibleLinearElasticityPressure")
                return std::make_shared<IncompressibleLinearElasticityPressure>();
 
            else if (formulation == "SaintVenant")
                return std::make_shared<SaintVenantElasticity>();
            else if (formulation == "NeoHookean")
                return std::make_shared<NeoHookeanElasticity>();
            else if (formulation == "IsochoricNeoHookean")
                return std::make_shared<IsochoricNeoHookean>();
            else if (formulation == "MooneyRivlin")
                return std::make_shared<MooneyRivlinElasticity>();
            else if (formulation == "MooneyRivlin3Param")
                return std::make_shared<MooneyRivlin3ParamElasticity>();
            else if (formulation == "MooneyRivlin3ParamSymbolic")
                return std::make_shared<MooneyRivlin3ParamSymbolic>();
            else if (formulation == "MultiModels")
                return std::make_shared<MultiModel>();
            else if (formulation == "MaterialSum")
                return std::make_shared<SumModel>();
            else if (formulation == "UnconstrainedOgden")
                return std::make_shared<UnconstrainedOgdenElasticity>();
            else if (formulation == "IncompressibleOgden")
                return std::make_shared<IncompressibleOgdenElasticity>();
            else if (formulation == "VolumePenalty")
                return std::make_shared<VolumePenalty>();
            else if (formulation == "InversionBarrier")
                return std::make_shared<InversionBarrier>();
 
            else if (formulation == "HGOFiber")
                return std::make_shared<HGOFiber>();
            else if (formulation == "HGODispersion")
                return std::make_shared<HGODispersion>();
 
            else if (formulation == "ActiveFiber")
                return std::make_shared<ActiveFiber>();
 
            else if (formulation == "Stokes")
                return std::make_shared<StokesVelocity>();
            else if (formulation == "StokesPressure")
                return std::make_shared<StokesPressure>();
            else if (formulation == "NavierStokes")
                return std::make_shared<NavierStokesVelocity>();
            else if (formulation == "NavierStokesFSI")
                return std::make_shared<NavierStokesVelocity>();
            else if (formulation == "OperatorSplitting")
                return std::make_shared<OperatorSplitting>();
 
            else if (formulation == "AMIPS")
                return std::make_shared<AMIPSEnergy>();
            else if (formulation == "FixedCorotational")
                return std::make_shared<FixedCorotational>();
 
            log_and_throw_error("Inavalid assembler name {}", formulation);
        }
 
        std::shared_ptr<MixedAssembler> AssemblerUtils::make_mixed_assembler(const std::string &formulation)
        {
            if (formulation == "Bilaplacian")
                return std::make_shared<BilaplacianMixed>();
            else if (formulation == "IncompressibleLinearElasticity")
                return std::make_shared<IncompressibleLinearElasticityMixed>();
            else if (formulation == "Stokes" || formulation == "NavierStokes" || formulation == "NavierStokesFSI" || formulation == "OperatorSplitting")
                return std::make_shared<StokesMixed>();
 
            log_and_throw_error("Inavalid mixed assembler name {}", formulation);
        }
 
        std::shared_ptr<MixedNLAssembler> AssemblerUtils::make_mixed_nl_assembler(const std::string &formulation)
        {
            if (formulation == "ThermoElasticity")
                return std::make_shared<ThermoElasticity>();
 
            log_and_throw_error("Inavalid mixed nonlinear assembler name {}", formulation);
        }
 
        void AssemblerUtils::merge_mixed_matrices(
            const int n_bases, const int n_pressure_bases, const int problem_dim, const bool add_average,
            const StiffnessMatrix &velocity_stiffness, const StiffnessMatrix &mixed_stiffness, const StiffnessMatrix &pressure_stiffness,
            StiffnessMatrix &stiffness)
        {
            assert(velocity_stiffness.rows() == velocity_stiffness.cols());
            assert(velocity_stiffness.rows() == n_bases * problem_dim);
 
            assert(mixed_stiffness.size() == 0 || mixed_stiffness.rows() == n_bases * problem_dim);
            assert(mixed_stiffness.size() == 0 || mixed_stiffness.cols() == n_pressure_bases);
 
            assert(pressure_stiffness.size() == 0 || pressure_stiffness.rows() == n_pressure_bases);
            assert(pressure_stiffness.size() == 0 || pressure_stiffness.cols() == n_pressure_bases);
 
            const int avg_offset = add_average ? 1 : 0;
 
            std::vector<Eigen::Triplet<double>> blocks;
            blocks.reserve(velocity_stiffness.nonZeros() + 2 * mixed_stiffness.nonZeros() + pressure_stiffness.nonZeros() + 2 * avg_offset * velocity_stiffness.rows());
 
            for (int k = 0; k < velocity_stiffness.outerSize(); ++k)
            {
                for (StiffnessMatrix::InnerIterator it(velocity_stiffness, k); it; ++it)
                {
                    blocks.emplace_back(it.row(), it.col(), it.value());
                }
            }
 
            for (int k = 0; k < mixed_stiffness.outerSize(); ++k)
            {
                for (StiffnessMatrix::InnerIterator it(mixed_stiffness, k); it; ++it)
                {
                    blocks.emplace_back(it.row(), n_bases * problem_dim + it.col(), it.value());
                    blocks.emplace_back(it.col() + n_bases * problem_dim, it.row(), it.value());
                }
            }
 
            for (int k = 0; k < pressure_stiffness.outerSize(); ++k)
            {
                for (StiffnessMatrix::InnerIterator it(pressure_stiffness, k); it; ++it)
                {
                    blocks.emplace_back(n_bases * problem_dim + it.row(), n_bases * problem_dim + it.col(), it.value());
                }
            }
 
            if (add_average)
            {
                const double val = 1.0 / n_pressure_bases;
                for (int i = 0; i < n_pressure_bases; ++i)
                {
                    blocks.emplace_back(n_bases * problem_dim + i, n_bases * problem_dim + n_pressure_bases, val);
                    blocks.emplace_back(n_bases * problem_dim + n_pressure_bases, n_bases * problem_dim + i, val);
                }
            }
 
            stiffness.resize(n_bases * problem_dim + n_pressure_bases + avg_offset, n_bases * problem_dim + n_pressure_bases + avg_offset);
            stiffness.setFromTriplets(blocks.begin(), blocks.end());
            stiffness.makeCompressed();
 
            // static int c = 0;
            // Eigen::saveMarket(stiffness, "stiffness.txt");
            // Eigen::saveMarket(velocity_stiffness, "velocity_stiffness.txt");
            // Eigen::saveMarket(mixed_stiffness, "mixed_stiffness.txt");
            // Eigen::saveMarket(pressure_stiffness, "pressure_stiffness.txt");
        }
 
        int AssemblerUtils::quadrature_order(const std::string &assembler, const int basis_degree, const BasisType &b_type, const int dim)
        {
            // note: minimum quadrature order is always 1
            if (assembler == "Mass")
            {
                // multiply by two since we are multiplying phi_i by phi_j
                if (b_type == BasisType::SIMPLEX_LAGRANGE || b_type == BasisType::CUBE_LAGRANGE)
                    return std::max(basis_degree * 2, 1);
                else
                    return basis_degree * 2 + 1;
            }
            else if (assembler == "NavierStokes" || assembler == "NavierStokesFSI")
            {
                if (b_type == BasisType::SIMPLEX_LAGRANGE)
                    return std::max((basis_degree - 1) + basis_degree, 1);
                else if (b_type == BasisType::CUBE_LAGRANGE)
                    return std::max(basis_degree * 2, 1);
                else
                    return basis_degree * 2 + 1;
            }
            else
            {
                // subtract one since we take a derivative (lowers polynomial order by 1)
                // multiply by two since we are multiplying grad phi_i by grad phi_j
                if (b_type == BasisType::SIMPLEX_LAGRANGE)
                {
                    return std::max((basis_degree - 1) * 2, 1);
                }
                else if (b_type == BasisType::CUBE_LAGRANGE || b_type == BasisType::PRISM_LAGRANGE || b_type == BasisType::PYRAMID_LAGRANGE)
                {
                    // in this case we have a tensor product basis
                    // this computes the quadrature order along a single axis
                    // the Quadrature itself takes a tensor product of the given quadrature points
                    // to form the full quadrature for the basis
                    // taking a gradient leaves at least one variable whose power remains unchanged
                    // thus, we don't subtract 1
                    // note that this is overkill for the variable that was differentiated
                    return std::max(basis_degree * 2, 1);
                }
                else
                {
                    return (basis_degree - 1) * 2 + 1;
                }
            }
        }
 
        std::vector<std::string> AssemblerUtils::elastic_materials()
        {
            const static std::vector<std::string> elastic_materials = {
                "LinearElasticity",
                "HookeLinearElasticity",
                "SaintVenant",
                "NeoHookean",
                "MooneyRivlin",
                "MooneyRivlin3Param",
                "MooneyRivlin3ParamSymbolic",
                "UnconstrainedOgden",
                "IncompressibleOgden",
                "IsochoricNeoHookean",
                "HGOFiber",
                "HGODispersion",
                "ActiveFiber",
                "FixedCorotational",
                "VolumePenalty",
                "AMIPS",
                "MaterialSum",
                "MultiModels"};
 
            return elastic_materials;
        }
 
        bool AssemblerUtils::is_elastic_material(const std::string &material)
        {
            for (const auto &m : elastic_materials())
            {
                if (material == m)
                    return true;
            }
            return false;
        }
 
        AllElasticMaterials::AllElasticMaterials()
        {
            for (const auto &m : AssemblerUtils::elastic_materials())
            {
                // skip multimodels
                // this is a special case where we have multiple models
                // and we need to create a new assembler for each model
                // this is handled in the MultiModel class
                // and not here
                if (m == "MultiModels")
                    continue;
                const auto assembler = AssemblerUtils::make_assembler(m);
                // cast assembler to elasticity assembler
                elastic_material_map_[m] = std::dynamic_pointer_cast<ElasticityNLAssembler>(assembler);
                assert(elastic_material_map_[m] != nullptr);
            }
        }
 
        void AllElasticMaterials::set_size(const int size)
        {
            for (auto &it : elastic_material_map_)
            {
                it.second->set_size(size);
            }
        }
 
        void AllElasticMaterials::add_multimaterial(const int index, const json &params, const Units &units, const std::string &root_path)
        {
            for (auto &it : elastic_material_map_)
            {
                it.second->add_multimaterial(index, params, units, root_path);
            }
        }
 
        std::shared_ptr<assembler::ElasticityNLAssembler> AllElasticMaterials::get_assembler(const std::string &name) const
        {
            return elastic_material_map_.at(name);
        }
 
        std::map<std::string, Assembler::ParamFunc> AllElasticMaterials::parameters() const
        {
            std::map<std::string, Assembler::ParamFunc> params;
            for (const auto &m : elastic_material_map_)
            {
                const auto assembler = m.second;
                auto p = assembler->parameters();
                for (auto &it : p)
                {
                    params[m.first + "/" + it.first] = it.second;
                }
            }
            return params;
        }
    } // namespace assembler
} // namespace polyfem