IncompressibleLinElast.cpp

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#include "IncompressibleLinElast.hpp"
 
namespace polyfem::assembler
{
    using namespace basis;
 
    void IncompressibleLinearElasticityDispacement::add_multimaterial(const int index, const json &params, const Units &units)
    {
        assert(size() == 2 || size() == 3);
 
        params_.add_multimaterial(index, params, size() == 3, units.stress());
    }
    void IncompressibleLinearElasticityDispacement::add_multimaterial(const int index, const json &params, const Units &units) {…}
 
    Eigen::Matrix<double, Eigen::Dynamic, 1, 0, 9, 1>
    IncompressibleLinearElasticityDispacement::assemble(const LinearAssemblerData &data) const
    {
        // 2mu (epsi : epsj)
        assert(size() == 2 || size() == 3);
 
        Eigen::Matrix<double, Eigen::Dynamic, 1, 0, 9, 1> res(size() * size());
        res.setZero();
 
        const Eigen::MatrixXd &gradi = data.vals.basis_values[data.i].grad_t_m;
        const Eigen::MatrixXd &gradj = data.vals.basis_values[data.j].grad_t_m;
 
        Eigen::Matrix<double, Eigen::Dynamic, Eigen::Dynamic, 0, 3, 3> epsi(size(), size());
        Eigen::Matrix<double, Eigen::Dynamic, Eigen::Dynamic, 0, 3, 3> epsj(size(), size());
 
        for (long p = 0; p < gradi.rows(); ++p)
        {
 
            double lambda, mu;
            params_.lambda_mu(data.vals.quadrature.points.row(p), data.vals.val.row(p), data.t, data.vals.element_id, lambda, mu);
 
            for (int di = 0; di < size(); ++di)
            {
                epsi.setZero();
                epsi.row(di) = gradi.row(p);
                epsi = ((epsi + epsi.transpose()) / 2).eval();
                for (int dj = 0; dj < size(); ++dj)
                {
                    epsj.setZero();
                    epsj.row(dj) = gradj.row(p);
                    epsj = ((epsj + epsj.transpose()) / 2.0).eval();
 
                    res(dj * size() + di) += 2 * mu * (epsi.array() * epsj.array()).sum() * data.da(p);
                }
            }
        }
 
        return res;
    }
    IncompressibleLinearElasticityDispacement::assemble(const LinearAssemblerData &data) const {…}
 
    void IncompressibleLinearElasticityDispacement::assign_stress_tensor(const OutputData &data,
                                                                         const int all_size,
                                                                         const ElasticityTensorType &type,
                                                                         Eigen::MatrixXd &all,
                                                                         const std::function<Eigen::MatrixXd(const Eigen::MatrixXd &)> &fun) const
    {
        const auto &displacement = data.fun;
        const auto &local_pts = data.local_pts;
        const auto &bs = data.bs;
        const auto &gbs = data.gbs;
        const auto el_id = data.el_id;
 
        assert(size() == 2 || size() == 3);
        all.resize(local_pts.rows(), all_size);
        assert(displacement.cols() == 1);
 
        Eigen::MatrixXd displacement_grad(size(), size());
 
        ElementAssemblyValues vals;
        vals.compute(el_id, size() == 3, local_pts, bs, gbs);
 
        for (long p = 0; p < local_pts.rows(); ++p)
        {
            compute_diplacement_grad(size(), bs, vals, local_pts, p, displacement, displacement_grad);
 
            if (type == ElasticityTensorType::F)
            {
                all.row(p) = fun(displacement_grad + Eigen::MatrixXd::Identity(size(), size()));
                continue;
            }
 
            double lambda, mu;
            params_.lambda_mu(local_pts.row(p), vals.val.row(p), data.t, vals.element_id, lambda, mu);
 
            const Eigen::MatrixXd strain = (displacement_grad + displacement_grad.transpose()) / 2;
            Eigen::MatrixXd stress = 2 * mu * strain + lambda * strain.trace() * Eigen::MatrixXd::Identity(size(), size());
 
            if (type == ElasticityTensorType::PK1)
                stress = pk1_from_cauchy(stress, displacement_grad + Eigen::MatrixXd::Identity(size(), size()));
            else if (type == ElasticityTensorType::PK2)
                stress = pk2_from_cauchy(stress, displacement_grad + Eigen::MatrixXd::Identity(size(), size()));
 
            all.row(p) = fun(stress);
        }
    }
    void IncompressibleLinearElasticityDispacement::assign_stress_tensor(const OutputData &data, {…}
 
    std::map<std::string, Assembler::ParamFunc> IncompressibleLinearElasticityDispacement::parameters() const
    {
        std::map<std::string, ParamFunc> res;
        const auto &params = params_;
        const int size = this->size();
 
        res["lambda"] = [&params](const RowVectorNd &uv, const RowVectorNd &p, double t, int e) {
            double lambda, mu;
 
            params.lambda_mu(uv, p, t, e, lambda, mu);
            return lambda;
        };
 
        res["mu"] = [&params](const RowVectorNd &uv, const RowVectorNd &p, double t, int e) {
            double lambda, mu;
 
            params.lambda_mu(uv, p, t, e, lambda, mu);
            return mu;
        };
 
        res["E"] = [&params, size](const RowVectorNd &uv, const RowVectorNd &p, double t, int e) {
            double lambda, mu;
            params.lambda_mu(uv, p, t, e, lambda, mu);
 
            if (size == 3)
                return mu * (3.0 * lambda + 2.0 * mu) / (lambda + mu);
            else
                return 2 * mu * (2.0 * lambda + 2.0 * mu) / (lambda + 2.0 * mu);
        };
 
        res["nu"] = [&params, size](const RowVectorNd &uv, const RowVectorNd &p, double t, int e) {
            double lambda, mu;
 
            params.lambda_mu(uv, p, t, e, lambda, mu);
 
            if (size == 3)
                return lambda / (2.0 * (lambda + mu));
            else
                return lambda / (lambda + 2.0 * mu);
        };
 
        return res;
    }
    std::map<std::string, Assembler::ParamFunc> IncompressibleLinearElasticityDispacement::parameters() const {…}
 
    Eigen::Matrix<double, Eigen::Dynamic, 1, 0, 3, 1>
    IncompressibleLinearElasticityMixed::assemble(const MixedAssemblerData &data) const
    {
        // (psii : div phij)  = -psii * gradphij
        assert(size() == 2 || size() == 3);
        Eigen::Matrix<double, Eigen::Dynamic, 1, 0, 3, 1> res(rows() * cols());
        res.setZero();
 
        const Eigen::MatrixXd &psii = data.psi_vals.basis_values[data.i].val;
        const Eigen::MatrixXd &gradphij = data.phi_vals.basis_values[data.j].grad_t_m;
        assert(psii.size() == gradphij.rows());
        assert(gradphij.cols() == rows());
 
        for (int k = 0; k < gradphij.rows(); ++k)
        {
            res -= psii(k) * gradphij.row(k) * data.da(k);
        }
 
        return res;
    }
    IncompressibleLinearElasticityMixed::assemble(const MixedAssemblerData &data) const {…}
 
    void IncompressibleLinearElasticityPressure::add_multimaterial(const int index, const json &params, const Units &units)
    {
        assert(disp_size_ == 2 || disp_size_ == 3);
 
        params_.add_multimaterial(index, params, disp_size_ == 3, units.stress());
    }
    void IncompressibleLinearElasticityPressure::add_multimaterial(const int index, const json &params, const Units &units) {…}
 
    Eigen::Matrix<double, Eigen::Dynamic, 1, 0, 9, 1>
    IncompressibleLinearElasticityPressure::assemble(const LinearAssemblerData &data) const
    {
        // -1/lambda phi_ * phi_j
 
        const Eigen::MatrixXd &phii = data.vals.basis_values[data.i].val;
        const Eigen::MatrixXd &phij = data.vals.basis_values[data.j].val;
 
        double res = 0;
 
        for (long p = 0; p < data.da.size(); ++p)
        {
            double lambda, mu;
            params_.lambda_mu(data.vals.quadrature.points.row(p), data.vals.val.row(p), data.t, data.vals.element_id, lambda, mu);
 
            res += -phii(p) * phij(p) * data.da(p) / lambda;
        }
 
        // double res = (phii.array() * phij.array() * da.array()).sum();
        // res *= -1. / lambda;
 
        return Eigen::Matrix<double, 1, 1>::Constant(res);
    }
    IncompressibleLinearElasticityPressure::assemble(const LinearAssemblerData &data) const {…}
} // namespace polyfem::assembler