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polyfem::mesh::NCMesh2D Class Reference

#include <NCMesh2D.hpp>

Inheritance diagram for polyfem::mesh::NCMesh2D:
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Collaboration diagram for polyfem::mesh::NCMesh2D:
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Classes

struct  ArrayHasher2D
 
struct  follower_edge
 
struct  follower_face
 
struct  ncBoundary
 
struct  ncElem
 
struct  ncVert
 

Public Member Functions

 NCMesh2D ()=default
 
virtual ~NCMesh2D ()=default
 
 NCMesh2D (NCMesh2D &&)=default
 
NCMesh2Doperator= (NCMesh2D &&)=default
 
 NCMesh2D (const NCMesh2D &)=default
 
NCMesh2Doperator= (const NCMesh2D &)=default
 
bool is_conforming () const override
 if the mesh is conforming
 
int n_faces () const override
 number of faces
 
int n_edges () const override
 number of edges
 
int n_vertices () const override
 number of vertices
 
int n_face_vertices (const int f_id) const override
 number of vertices of a face
 
int face_ref_level (const int f_id) const
 
int face_vertex (const int f_id, const int lv_id) const override
 id of the face vertex
 
int edge_vertex (const int e_id, const int lv_id) const override
 id of the edge vertex
 
int cell_vertex (const int f_id, const int lv_id) const override
 id of the vertex of a cell
 
int face_edge (const int f_id, const int le_id) const
 
int leader_edge_of_vertex (const int v_id) const
 
int leader_edge_of_edge (const int e_id) const
 
int n_follower_edges (const int e_id) const
 
int n_face_neighbors (const int e_id) const
 
int face_neighbor (const int e_id) const
 
bool is_boundary_vertex (const int vertex_global_id) const override
 is vertex boundary
 
bool is_boundary_edge (const int edge_global_id) const override
 is edge boundary
 
bool is_boundary_element (const int element_global_id) const override
 is cell boundary
 
void refine (const int n_refinement, const double t) override
 refine the mesh
 
bool save (const std::string &path) const override
 
bool build_from_matrices (const Eigen::MatrixXd &V, const Eigen::MatrixXi &F) override
 build a mesh from matrices
 
void attach_higher_order_nodes (const Eigen::MatrixXd &V, const std::vector< std::vector< int > > &nodes) override
 attach high order nodes
 
RowVectorNd edge_node (const Navigation::Index &index, const int n_new_nodes, const int i) const override
 
RowVectorNd face_node (const Navigation::Index &index, const int n_new_nodes, const int i, const int j) const override
 
void normalize () override
 normalize the mesh
 
double edge_length (const int gid) const override
 edge length
 
void compute_elements_tag () override
 compute element types, see ElementType
 
void update_elements_tag () override
 Update elements types.
 
void set_point (const int global_index, const RowVectorNd &p) override
 Set the point.
 
RowVectorNd point (const int global_index) const override
 point coordinates
 
RowVectorNd edge_barycenter (const int index) const override
 edge barycenter
 
void bounding_box (RowVectorNd &min, RowVectorNd &max) const override
 computes the bbox of the mesh
 
void compute_boundary_ids (const double eps) override
 computes the selection based on the bbx of the mesh.
 
void compute_boundary_ids (const std::function< int(const RowVectorNd &)> &marker) override
 computes boundary selections based on a function
 
void compute_boundary_ids (const std::function< int(const RowVectorNd &, bool)> &marker) override
 computes boundary selections based on a function
 
void compute_boundary_ids (const std::function< int(const size_t, const RowVectorNd &, bool)> &marker) override
 computes boundary selections based on a function
 
void compute_boundary_ids (const std::function< int(const std::vector< int > &, bool)> &marker) override
 computes boundary selections based on a function
 
void compute_body_ids (const std::function< int(const size_t, const RowVectorNd &)> &marker) override
 computes boundary selections based on a function
 
void compute_boundary_ids (const std::function< int(const size_t, const std::vector< int > &, const RowVectorNd &, bool)> &marker) override
 computes boundary selections based on a function
 
void set_boundary_ids (const std::vector< int > &boundary_ids) override
 Set the boundary selection from a vector.
 
void set_body_ids (const std::vector< int > &body_ids) override
 Set the volume sections.
 
int get_boundary_id (const int primitive) const override
 Get the boundary selection of an element (face in 3d, edge in 2d)
 
int get_body_id (const int primitive) const override
 Get the volume selection of an element (cell in 3d, face in 2d)
 
Navigation::Index get_index_from_face (int f, int lv=0) const override
 
Navigation::Index switch_vertex (Navigation::Index idx) const override
 
Navigation::Index switch_edge (Navigation::Index idx) const override
 
Navigation::Index switch_face (Navigation::Index idx) const override
 
void triangulate_faces (Eigen::MatrixXi &tris, Eigen::MatrixXd &pts, std::vector< int > &ranges) const override
 generate a triangular representation of every face
 
void refine_element (int id_full)
 
void refine_elements (const std::vector< int > &ids)
 
void coarsen_element (int id_full)
 
void mark_boundary ()
 
void prepare_mesh () override
 method used to finalize the mesh.
 
void build_index_mapping ()
 
void append (const Mesh &mesh) override
 appends a new mesh to the end of this
 
std::unique_ptr< Meshcopy () const override
 Create a copy of the mesh.
 
- Public Member Functions inherited from polyfem::mesh::Mesh2D
 Mesh2D ()=default
 
virtual ~Mesh2D ()=default
 
 Mesh2D (Mesh2D &&)=default
 
Mesh2Doperator= (Mesh2D &&)=default
 
 Mesh2D (const Mesh2D &)=default
 
Mesh2Doperator= (const Mesh2D &)=default
 
bool is_volume () const override
 checks if mesh is volume
 
int n_cells () const override
 number of cells
 
int n_cell_vertices (const int c_id) const override
 number of vertices of a cell
 
bool is_boundary_face (const int face_global_id) const override
 is face boundary
 
RowVectorNd cell_barycenter (const int index) const override
 cell barycenter
 
void compute_face_jacobian (const int el_id, const Eigen::MatrixXd &reference_map, Eigen::MatrixXd &jacobian) const
 
void barycentric_coords (const RowVectorNd &p, const int el_id, Eigen::MatrixXd &coord) const override
 constructs barycentric coodiantes for a point p.
 
RowVectorNd face_barycenter (const int index) const override
 face barycenter
 
void compute_element_barycenters (Eigen::MatrixXd &barycenters) const override
 utility for 2d/3d.
 
void elements_boxes (std::vector< std::array< Eigen::Vector3d, 2 > > &boxes) const override
 constructs a box around every element (3d cell, 2d face)
 
Navigation::Index next_around_face (Navigation::Index idx) const
 
Navigation::Index next_around_vertex (Navigation::Index idx) const
 
void get_edges (Eigen::MatrixXd &p0, Eigen::MatrixXd &p1) const override
 Get all the edges.
 
void get_edges (Eigen::MatrixXd &p0, Eigen::MatrixXd &p1, const std::vector< bool > &valid_elements) const override
 Get all the edges according to valid_elements selection.
 
- Public Member Functions inherited from polyfem::mesh::Mesh
virtual ~Mesh ()=default
 Destroy the Mesh object.
 
 Mesh (Mesh &&)=default
 Construct a new Mesh object.
 
Meshoperator= (Mesh &&)=default
 Copy constructor.
 
 Mesh (const Mesh &)=default
 Construct a new Mesh object.
 
Meshoperator= (const Mesh &)=default
 
int dimension () const
 utily for dimension
 
int n_elements () const
 utitlity to return the number of elements, cells or faces in 3d and 2d
 
int n_boundary_elements () const
 utitlity to return the number of boundary elements, faces or edges in 3d and 2d
 
int element_vertex (const int el_id, const int lv_id) const
 id of the vertex of a element
 
int boundary_element_vertex (const int primitive_id, const int lv_id) const
 
const Eigen::MatrixXi & orders () const
 order of each element
 
bool is_rational () const
 check if curved mesh has rational polynomials elements
 
void set_is_rational (const bool in_is_rational)
 Set the is rational object.
 
virtual double quad_area (const int gid) const
 area of a quad face of an hex mesh
 
virtual double tri_area (const int gid) const
 area of a tri face of a tet mesh
 
void edge_barycenters (Eigen::MatrixXd &barycenters) const
 all edges barycenters
 
void face_barycenters (Eigen::MatrixXd &barycenters) const
 all face barycenters
 
void cell_barycenters (Eigen::MatrixXd &barycenters) const
 all cells barycenters
 
bool is_spline_compatible (const int el_id) const
 checks if element is spline compatible
 
bool is_cube (const int el_id) const
 checks if element is cube compatible
 
bool is_polytope (const int el_id) const
 checks if element is polygon compatible
 
bool is_simplex (const int el_id) const
 checks if element is simples compatible
 
const std::vector< ElementType > & elements_tag () const
 Returns the elements types.
 
void set_tag (const int el, const ElementType type)
 changes the element type
 
void compute_node_ids (const std::function< int(const size_t, const RowVectorNd &, bool)> &marker)
 computes boundary selections based on a function
 
virtual void load_boundary_ids (const std::string &path)
 loads the boundary selections for a file
 
virtual int get_default_boundary_id (const int primitive) const
 Get the default boundary selection of an element (face in 3d, edge in 2d)
 
virtual int get_node_id (const int node_id) const
 Get the boundary selection of a node.
 
void update_nodes (const Eigen::VectorXi &in_node_to_node)
 Update the node ids to reorder them.
 
virtual const std::vector< int > & get_body_ids () const
 Get the volume selection of all elements (cells in 3d, faces in 2d)
 
bool has_node_ids () const
 checks if points selections are available
 
bool has_boundary_ids () const
 checks if surface selections are available
 
virtual bool has_body_ids () const
 checks if volumes selections are available
 
const std::vector< double > & cell_weights (const int cell_index) const
 weights for rational polynomial meshes
 
void set_cell_weights (const std::vector< std::vector< double > > &in_cell_weights)
 Set the cell weights for rational polynomial meshes.
 
bool has_poly () const
 checks if the mesh has polytopes
 
bool is_simplicial () const
 checks if the mesh is simplicial
 
bool is_linear () const
 check if the mesh is linear
 
std::vector< std::pair< int, int > > edges () const
 list of sorted edges.
 
std::vector< std::vector< int > > faces () const
 list of sorted faces.
 
std::unordered_map< std::pair< int, int >, size_t, polyfem::utils::HashPairedges_to_ids () const
 map from edge (pair of v id) to the id of the edge
 
std::unordered_map< std::vector< int >, size_t, polyfem::utils::HashVectorfaces_to_ids () const
 map from face (tuple of v id) to the id of the face
 
const Eigen::VectorXi & in_ordered_vertices () const
 Order of the input vertices.
 
const Eigen::MatrixXi & in_ordered_edges () const
 Order of the input edges.
 
const Eigen::MatrixXi & in_ordered_faces () const
 Order of the input edges.
 
void append (const std::unique_ptr< Mesh > &mesh)
 appends a new mesh to the end of this, utility that takes pointer, calls other one
 
void apply_affine_transformation (const MatrixNd &A, const VectorNd &b)
 Apply an affine transformation \(Ax+b\) to the vertex positions \(x\).
 

Static Public Member Functions

static double element_weight_to_edge_weight (const int l, const Eigen::Vector2d &pos)
 
- Static Public Member Functions inherited from polyfem::mesh::Mesh
static std::unique_ptr< Meshcreate (const std::string &path, const bool non_conforming=false)
 factory to build the proper mesh
 
static std::unique_ptr< Meshcreate (GEO::Mesh &M, const bool non_conforming=false)
 factory to build the proper mesh
 
static std::unique_ptr< Meshcreate (const Eigen::MatrixXd &vertices, const Eigen::MatrixXi &cells, const bool non_conforming=false)
 factory to build the proper mesh
 
static std::unique_ptr< Meshcreate (const int dim, const bool non_conforming=false)
 factory to build the proper empty mesh
 

Protected Member Functions

bool load (const std::string &path) override
 loads a mesh from the path
 
bool load (const GEO::Mesh &mesh) override
 loads a mesh from a geo mesh
 
int all_to_valid_vertex (const int id) const
 
int valid_to_all_vertex (const int id) const
 
int all_to_valid_edge (const int id) const
 
int valid_to_all_edge (const int id) const
 
int all_to_valid_elem (const int id) const
 
int valid_to_all_elem (const int id) const
 
int find_vertex (Eigen::Vector2i v) const
 
int find_vertex (const int v1, const int v2) const
 
int get_vertex (Eigen::Vector2i v)
 
int find_edge (Eigen::Vector2i v) const
 
int find_edge (const int v1, const int v2) const
 
int get_edge (Eigen::Vector2i v)
 
int get_edge (const int v1, const int v2)
 
void traverse_edge (Eigen::Vector2i v, double p1, double p2, int depth, std::vector< follower_edge > &list) const
 
void build_edge_follower_chain ()
 
void build_element_vertex_adjacency ()
 
int add_element (Eigen::Vector3i v, int parent=-1)
 
- Protected Member Functions inherited from polyfem::mesh::Mesh
 Mesh ()=default
 Construct a new Mesh object.
 

Protected Attributes

int n_elements = 0
 
bool index_prepared = false
 
bool adj_prepared = false
 
std::vector< ncElemelements
 
std::vector< ncVertvertices
 
std::vector< ncBoundaryedges
 
std::unordered_map< Eigen::Vector2i, int, ArrayHasher2DmidpointMap
 
std::unordered_map< Eigen::Vector2i, int, ArrayHasher2DedgeMap
 
std::vector< int > all_to_valid_elemMap
 
std::vector< int > valid_to_all_elemMap
 
std::vector< int > all_to_valid_vertexMap
 
std::vector< int > valid_to_all_vertexMap
 
std::vector< int > all_to_valid_edgeMap
 
std::vector< int > valid_to_all_edgeMap
 
std::vector< int > refineHistory
 
Eigen::SparseMatrix< bool, Eigen::RowMajor > elementAdj
 
- Protected Attributes inherited from polyfem::mesh::Mesh
std::vector< ElementTypeelements_tag_
 list of element types
 
std::vector< int > node_ids_
 list of node labels
 
std::vector< int > boundary_ids_
 list of surface labels
 
std::vector< int > body_ids_
 list of volume labels
 
Eigen::MatrixXi orders_
 list of geometry orders, one per cell
 
bool is_rational_ = false
 stores if the mesh is rational
 
std::vector< EdgeNodesedge_nodes_
 high-order nodes associates to edges
 
std::vector< FaceNodesface_nodes_
 high-order nodes associates to faces
 
std::vector< CellNodescell_nodes_
 high-order nodes associates to cells
 
std::vector< std::vector< double > > cell_weights_
 weights associates to cells for rational polynomail meshes
 
Eigen::VectorXi in_ordered_vertices_
 Order of the input vertices.
 
Eigen::MatrixXi in_ordered_edges_
 Order of the input edges.
 
Eigen::MatrixXi in_ordered_faces_
 Order of the input faces, TODO: change to std::vector of Eigen::Vector.
 

Detailed Description

Definition at line 9 of file NCMesh2D.hpp.

Constructor & Destructor Documentation

◆ NCMesh2D() [1/3]

polyfem::mesh::NCMesh2D::NCMesh2D ( )
default

◆ ~NCMesh2D()

virtual polyfem::mesh::NCMesh2D::~NCMesh2D ( )
virtualdefault

◆ NCMesh2D() [2/3]

polyfem::mesh::NCMesh2D::NCMesh2D ( NCMesh2D &&  )
default

◆ NCMesh2D() [3/3]

polyfem::mesh::NCMesh2D::NCMesh2D ( const NCMesh2D )
default

Member Function Documentation

◆ add_element()

int polyfem::mesh::NCMesh2D::add_element ( Eigen::Vector3i  v,
int  parent = -1 
)
protected

Definition at line 148 of file NCMesh2D.cpp.

References adj_prepared, edges, elements, get_edge(), index_prepared, n_elements, and vertices.

Referenced by append(), build_from_matrices(), load(), and refine_element().

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◆ all_to_valid_edge()

int polyfem::mesh::NCMesh2D::all_to_valid_edge ( const int  id) const
inlineprotected

Definition at line 334 of file NCMesh2D.hpp.

References all_to_valid_edgeMap, and index_prepared.

Referenced by face_edge(), get_index_from_face(), leader_edge_of_edge(), leader_edge_of_vertex(), and switch_edge().

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◆ all_to_valid_elem()

int polyfem::mesh::NCMesh2D::all_to_valid_elem ( const int  id) const
inlineprotected

Definition at line 348 of file NCMesh2D.hpp.

References all_to_valid_elemMap, and index_prepared.

Referenced by face_neighbor().

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◆ all_to_valid_vertex()

int polyfem::mesh::NCMesh2D::all_to_valid_vertex ( const int  id) const
inlineprotected

Definition at line 322 of file NCMesh2D.hpp.

References all_to_valid_vertexMap, and index_prepared.

Referenced by cell_vertex(), edge_vertex(), face_vertex(), get_index_from_face(), and switch_vertex().

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◆ append()

void polyfem::mesh::NCMesh2D::append ( const Mesh mesh)
overridevirtual

appends a new mesh to the end of this

Parameters
[in]meshto append

Reimplemented from polyfem::mesh::Mesh.

Definition at line 492 of file NCMesh2D.cpp.

References add_element(), polyfem::mesh::Mesh::append(), elements, n_faces(), n_vertices(), prepare_mesh(), and vertices.

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◆ attach_higher_order_nodes()

void polyfem::mesh::NCMesh2D::attach_higher_order_nodes ( const Eigen::MatrixXd &  V,
const std::vector< std::vector< int > > &  nodes 
)
overridevirtual

attach high order nodes

Parameters
[in]Vnodes
[in]nodeslist of nodes per element

Implements polyfem::mesh::Mesh.

Definition at line 71 of file NCMesh2D.cpp.

References n_faces().

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◆ bounding_box()

void polyfem::mesh::NCMesh2D::bounding_box ( RowVectorNd min,
RowVectorNd max 
) const
overridevirtual

computes the bbox of the mesh

Parameters
[out]minmin coodiante
[out]maxmax coodiante

Implements polyfem::mesh::Mesh.

Definition at line 590 of file NCMesh2D.cpp.

References vertices.

Referenced by compute_boundary_ids(), and normalize().

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◆ build_edge_follower_chain()

void polyfem::mesh::NCMesh2D::build_edge_follower_chain ( )
protected

Definition at line 299 of file NCMesh2D.cpp.

References edges, elements, and traverse_edge().

Referenced by prepare_mesh().

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◆ build_element_vertex_adjacency()

void polyfem::mesh::NCMesh2D::build_element_vertex_adjacency ( )
protected

Definition at line 375 of file NCMesh2D.cpp.

References edges, elements, polyfem::mesh::find(), polyfem::mesh::line_weight(), and vertices.

Referenced by prepare_mesh().

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◆ build_from_matrices()

bool polyfem::mesh::NCMesh2D::build_from_matrices ( const Eigen::MatrixXd &  V,
const Eigen::MatrixXi &  F 
)
overridevirtual

build a mesh from matrices

Parameters
[in]Vvertices
[in]Fconnectivity
Returns
if success

Implements polyfem::mesh::Mesh.

Definition at line 39 of file NCMesh2D.cpp.

References add_element(), adj_prepared, edgeMap, edges, elements, polyfem::F, index_prepared, midpointMap, n_elements, polyfem::mesh::orient_normals_2d(), prepare_mesh(), refineHistory, polyfem::mesh::to_geogram_mesh(), V, and vertices.

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◆ build_index_mapping()

void polyfem::mesh::NCMesh2D::build_index_mapping ( )

Definition at line 450 of file NCMesh2D.cpp.

References all_to_valid_edgeMap, all_to_valid_elemMap, all_to_valid_vertexMap, edges, elements, index_prepared, n_edges(), n_elements, n_vertices(), valid_to_all_edgeMap, valid_to_all_elemMap, valid_to_all_vertexMap, and vertices.

Referenced by prepare_mesh().

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◆ cell_vertex()

int polyfem::mesh::NCMesh2D::cell_vertex ( const int  f_id,
const int  lv_id 
) const
inlineoverridevirtual

id of the vertex of a cell

Parameters
[in]f_idglobal cell id
[in]lv_idlocal vertex id
Returns
vertex id

Implements polyfem::mesh::Mesh.

Definition at line 193 of file NCMesh2D.hpp.

References all_to_valid_vertex(), elements, valid_to_all_elem(), and vertices.

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◆ coarsen_element()

void polyfem::mesh::NCMesh2D::coarsen_element ( int  id_full)

Definition at line 254 of file NCMesh2D.cpp.

References adj_prepared, edges, elements, index_prepared, n_elements, refineHistory, and vertices.

◆ compute_body_ids()

void polyfem::mesh::NCMesh2D::compute_body_ids ( const std::function< int(const size_t, const RowVectorNd &)> &  marker)
overridevirtual

computes boundary selections based on a function

Parameters
[in]markerlambda function that takes the id and barycenter and returns an integer

Implements polyfem::mesh::Mesh.

Definition at line 799 of file NCMesh2D.cpp.

References polyfem::mesh::Mesh::body_ids_, elements, polyfem::mesh::Mesh2D::face_barycenter(), n_faces(), and valid_to_all_elem().

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◆ compute_boundary_ids() [1/6]

void polyfem::mesh::NCMesh2D::compute_boundary_ids ( const double  eps)
overridevirtual

computes the selection based on the bbx of the mesh.

Left gets 1, bottom 2, right 3, top 4, front 5, back 6

Parameters
[in]epstolerance for proximity

Implements polyfem::mesh::Mesh.

Definition at line 812 of file NCMesh2D.cpp.

References polyfem::mesh::Mesh::boundary_ids_, bounding_box(), edge_barycenter(), edges, is_boundary_edge(), n_edges(), and valid_to_all_edge().

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◆ compute_boundary_ids() [2/6]

void polyfem::mesh::NCMesh2D::compute_boundary_ids ( const std::function< int(const RowVectorNd &)> &  marker)
overridevirtual

computes boundary selections based on a function

Parameters
[in]markerlambda function that takes the barycenter and returns an integer

Implements polyfem::mesh::Mesh.

Definition at line 844 of file NCMesh2D.cpp.

References polyfem::mesh::Mesh::boundary_ids_, edge_barycenter(), edges, is_boundary_edge(), n_edges(), and valid_to_all_edge().

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◆ compute_boundary_ids() [3/6]

void polyfem::mesh::NCMesh2D::compute_boundary_ids ( const std::function< int(const RowVectorNd &, bool)> &  marker)
overridevirtual

computes boundary selections based on a function

Parameters
[in]markerlambda function that takes the barycenter and true/false if the element is on the boundary and returns an integer

Implements polyfem::mesh::Mesh.

Definition at line 862 of file NCMesh2D.cpp.

References polyfem::mesh::Mesh::boundary_ids_, edge_barycenter(), edges, is_boundary_edge(), n_edges(), and valid_to_all_edge().

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◆ compute_boundary_ids() [4/6]

void polyfem::mesh::NCMesh2D::compute_boundary_ids ( const std::function< int(const size_t, const RowVectorNd &, bool)> &  marker)
overridevirtual

computes boundary selections based on a function

Parameters
[in]markerlambda function that takes the id, barycenter, and true/false if the element is on the boundary and returns an integer

Implements polyfem::mesh::Mesh.

Definition at line 875 of file NCMesh2D.cpp.

References polyfem::mesh::Mesh::boundary_ids_, edge_barycenter(), edges, is_boundary_edge(), n_edges(), and valid_to_all_edge().

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◆ compute_boundary_ids() [5/6]

void polyfem::mesh::NCMesh2D::compute_boundary_ids ( const std::function< int(const size_t, const std::vector< int > &, const RowVectorNd &, bool)> &  marker)
overridevirtual

computes boundary selections based on a function

Parameters
[in]markerlambda function that takes the id, the list of vertices, the barycenter, and true/false if the element is on the boundary and returns an integer

Implements polyfem::mesh::Mesh.

Definition at line 902 of file NCMesh2D.cpp.

References polyfem::mesh::Mesh::boundary_ids_, edge_barycenter(), edge_vertex(), edges, is_boundary_edge(), n_edges(), and valid_to_all_edge().

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◆ compute_boundary_ids() [6/6]

void polyfem::mesh::NCMesh2D::compute_boundary_ids ( const std::function< int(const std::vector< int > &, bool)> &  marker)
overridevirtual

computes boundary selections based on a function

Parameters
[in]markerlambda function that takes the list of vertices and true/false if the element is on the boundary and returns an integer

Implements polyfem::mesh::Mesh.

Definition at line 888 of file NCMesh2D.cpp.

References polyfem::mesh::Mesh::boundary_ids_, edge_vertex(), edges, is_boundary_edge(), n_edges(), and valid_to_all_edge().

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◆ compute_elements_tag()

void polyfem::mesh::NCMesh2D::compute_elements_tag ( )
overridevirtual

compute element types, see ElementType

Implements polyfem::mesh::Mesh.

Definition at line 703 of file NCMesh2D.cpp.

References polyfem::mesh::Mesh::elements_tag_, n_faces(), and polyfem::mesh::SIMPLEX.

Referenced by prepare_mesh().

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◆ copy()

std::unique_ptr< Mesh > polyfem::mesh::NCMesh2D::copy ( ) const
overridevirtual

Create a copy of the mesh.

Returns
pointer to the new copy mesh

Implements polyfem::mesh::Mesh.

Definition at line 517 of file NCMesh2D.cpp.

◆ edge_barycenter()

RowVectorNd polyfem::mesh::NCMesh2D::edge_barycenter ( const int  e) const
overridevirtual

edge barycenter

Parameters
[in]eglobal edge index
Returns
edge barycenter

Implements polyfem::mesh::Mesh.

Definition at line 717 of file NCMesh2D.cpp.

References edge_vertex(), and point().

Referenced by compute_boundary_ids(), compute_boundary_ids(), compute_boundary_ids(), compute_boundary_ids(), and compute_boundary_ids().

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◆ edge_length()

double polyfem::mesh::NCMesh2D::edge_length ( const int  gid) const
overridevirtual

edge length

Parameters
[in]gidglobal edge id
Returns
edge length

Reimplemented from polyfem::mesh::Mesh.

Definition at line 695 of file NCMesh2D.cpp.

References edge_vertex(), and point().

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◆ edge_node()

RowVectorNd polyfem::mesh::NCMesh2D::edge_node ( const Navigation::Index index,
const int  n_new_nodes,
const int  i 
) const
overridevirtual

Implements polyfem::mesh::Mesh2D.

Definition at line 77 of file NCMesh2D.cpp.

References point(), switch_vertex(), and polyfem::mesh::Navigation::Index::vertex.

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◆ edge_vertex()

int polyfem::mesh::NCMesh2D::edge_vertex ( const int  e_id,
const int  lv_id 
) const
inlineoverridevirtual

id of the edge vertex

Parameters
[in]e_idglobal edge id
[in]lv_idlocal vertex index
Returns
int id of the face vertex

Implements polyfem::mesh::Mesh.

Definition at line 192 of file NCMesh2D.hpp.

References all_to_valid_vertex(), edges, valid_to_all_edge(), and vertices.

Referenced by compute_boundary_ids(), compute_boundary_ids(), edge_barycenter(), and edge_length().

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◆ element_weight_to_edge_weight()

double polyfem::mesh::NCMesh2D::element_weight_to_edge_weight ( const int  l,
const Eigen::Vector2d &  pos 
)
static

Definition at line 427 of file NCMesh2D.cpp.

◆ face_edge()

int polyfem::mesh::NCMesh2D::face_edge ( const int  f_id,
const int  le_id 
) const
inline

Definition at line 195 of file NCMesh2D.hpp.

References all_to_valid_edge(), edges, elements, and valid_to_all_elem().

Referenced by is_boundary_element().

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◆ face_neighbor()

int polyfem::mesh::NCMesh2D::face_neighbor ( const int  e_id) const
inline

Definition at line 216 of file NCMesh2D.hpp.

References all_to_valid_elem(), edges, and valid_to_all_edge().

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◆ face_node()

RowVectorNd polyfem::mesh::NCMesh2D::face_node ( const Navigation::Index index,
const int  n_new_nodes,
const int  i,
const int  j 
) const
overridevirtual

Implements polyfem::mesh::Mesh2D.

Definition at line 86 of file NCMesh2D.cpp.

References point(), switch_edge(), switch_vertex(), and polyfem::mesh::Navigation::Index::vertex.

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◆ face_ref_level()

int polyfem::mesh::NCMesh2D::face_ref_level ( const int  f_id) const
inline

Definition at line 189 of file NCMesh2D.hpp.

References elements, and valid_to_all_elem().

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◆ face_vertex()

int polyfem::mesh::NCMesh2D::face_vertex ( const int  f_id,
const int  lv_id 
) const
inlineoverridevirtual

id of the face vertex

Parameters
[in]f_idglobal face id
[in]lv_idlocal vertex index
Returns
int id of the face vertex

Implements polyfem::mesh::Mesh.

Definition at line 191 of file NCMesh2D.hpp.

References all_to_valid_vertex(), elements, valid_to_all_elem(), and vertices.

Referenced by triangulate_faces().

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◆ find_edge() [1/2]

int polyfem::mesh::NCMesh2D::find_edge ( const int  v1,
const int  v2 
) const
inlineprotected

Definition at line 368 of file NCMesh2D.hpp.

References find_edge().

Referenced by find_edge().

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◆ find_edge() [2/2]

int polyfem::mesh::NCMesh2D::find_edge ( Eigen::Vector2i  v) const
protected

Definition at line 125 of file NCMesh2D.cpp.

References edgeMap.

Referenced by get_edge(), refine_element(), and traverse_edge().

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◆ find_vertex() [1/2]

int polyfem::mesh::NCMesh2D::find_vertex ( const int  v1,
const int  v2 
) const
inlineprotected

Definition at line 361 of file NCMesh2D.hpp.

References find_vertex().

Referenced by find_vertex().

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◆ find_vertex() [2/2]

int polyfem::mesh::NCMesh2D::find_vertex ( Eigen::Vector2i  v) const
protected

Definition at line 101 of file NCMesh2D.cpp.

References midpointMap.

Referenced by get_vertex(), refine_element(), and traverse_edge().

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◆ get_body_id()

int polyfem::mesh::NCMesh2D::get_body_id ( const int  primitive) const
inlineoverridevirtual

Get the volume selection of an element (cell in 3d, face in 2d)

Parameters
[in]primitiveelement id
Returns
label of element

Reimplemented from polyfem::mesh::Mesh.

Definition at line 266 of file NCMesh2D.hpp.

References elements, and valid_to_all_elem().

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◆ get_boundary_id()

int polyfem::mesh::NCMesh2D::get_boundary_id ( const int  primitive) const
inlineoverridevirtual

Get the boundary selection of an element (face in 3d, edge in 2d)

Parameters
[in]primitiveelement id
Returns
label of element

Reimplemented from polyfem::mesh::Mesh.

Definition at line 265 of file NCMesh2D.hpp.

References edges, and valid_to_all_edge().

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◆ get_edge() [1/2]

int polyfem::mesh::NCMesh2D::get_edge ( const int  v1,
const int  v2 
)
inlineprotected

Definition at line 372 of file NCMesh2D.hpp.

References get_edge().

Referenced by get_edge().

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◆ get_edge() [2/2]

int polyfem::mesh::NCMesh2D::get_edge ( Eigen::Vector2i  v)
protected

Definition at line 135 of file NCMesh2D.cpp.

References edgeMap, edges, and find_edge().

Referenced by add_element(), and refine_element().

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◆ get_index_from_face()

Navigation::Index polyfem::mesh::NCMesh2D::get_index_from_face ( int  f,
int  lv = 0 
) const
overridevirtual

Implements polyfem::mesh::Mesh2D.

Definition at line 607 of file NCMesh2D.cpp.

References all_to_valid_edge(), all_to_valid_vertex(), polyfem::mesh::Navigation::Index::edge, elements, polyfem::mesh::Navigation::Index::face, polyfem::mesh::Navigation::Index::face_corner, valid_to_all_elem(), and polyfem::mesh::Navigation::Index::vertex.

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◆ get_vertex()

int polyfem::mesh::NCMesh2D::get_vertex ( Eigen::Vector2i  v)
protected

Definition at line 111 of file NCMesh2D.cpp.

References find_vertex(), midpointMap, and vertices.

Referenced by refine_element().

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◆ is_boundary_edge()

bool polyfem::mesh::NCMesh2D::is_boundary_edge ( const int  edge_global_id) const
inlineoverridevirtual

is edge boundary

Parameters
[in]edge_global_idglobal edge id
Returns
is edge boundary

Implements polyfem::mesh::Mesh.

Definition at line 219 of file NCMesh2D.hpp.

References edges, and valid_to_all_edge().

Referenced by compute_boundary_ids(), compute_boundary_ids(), compute_boundary_ids(), compute_boundary_ids(), compute_boundary_ids(), compute_boundary_ids(), and is_boundary_element().

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◆ is_boundary_element()

bool polyfem::mesh::NCMesh2D::is_boundary_element ( const int  element_global_id) const
overridevirtual

is cell boundary

Parameters
[in]element_global_idglobal cell id
Returns
is cell boundary

Implements polyfem::mesh::Mesh.

Definition at line 13 of file NCMesh2D.cpp.

References face_edge(), index_prepared, is_boundary_edge(), and n_face_vertices().

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◆ is_boundary_vertex()

bool polyfem::mesh::NCMesh2D::is_boundary_vertex ( const int  vertex_global_id) const
inlineoverridevirtual

is vertex boundary

Parameters
[in]vertex_global_idglobal vertex id
Returns
is vertex boundary

Implements polyfem::mesh::Mesh.

Definition at line 218 of file NCMesh2D.hpp.

References valid_to_all_vertex(), and vertices.

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◆ is_conforming()

bool polyfem::mesh::NCMesh2D::is_conforming ( ) const
inlineoverridevirtual

if the mesh is conforming

Returns
if the mesh is conforming

Implements polyfem::mesh::Mesh.

Definition at line 166 of file NCMesh2D.hpp.

◆ leader_edge_of_edge()

int polyfem::mesh::NCMesh2D::leader_edge_of_edge ( const int  e_id) const
inline

Definition at line 201 of file NCMesh2D.hpp.

References adj_prepared, all_to_valid_edge(), edges, and valid_to_all_edge().

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◆ leader_edge_of_vertex()

int polyfem::mesh::NCMesh2D::leader_edge_of_vertex ( const int  v_id) const
inline

Definition at line 196 of file NCMesh2D.hpp.

References adj_prepared, all_to_valid_edge(), valid_to_all_vertex(), and vertices.

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◆ load() [1/2]

bool polyfem::mesh::NCMesh2D::load ( const GEO::Mesh &  M)
overrideprotectedvirtual

loads a mesh from a geo mesh

Parameters
[in]Mgeo mesh
Returns
if success

Implements polyfem::mesh::Mesh.

Definition at line 554 of file NCMesh2D.cpp.

References add_element(), polyfem::F, n_elements, polyfem::mesh::orient_normals_2d(), prepare_mesh(), V, and vertices.

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◆ load() [2/2]

bool polyfem::mesh::NCMesh2D::load ( const std::string &  path)
overrideprotectedvirtual

loads a mesh from the path

Parameters
[in]pathfile location
Returns
if success

Implements polyfem::mesh::Mesh.

Definition at line 548 of file NCMesh2D.cpp.

◆ mark_boundary()

void polyfem::mesh::NCMesh2D::mark_boundary ( )

Definition at line 332 of file NCMesh2D.cpp.

References edges, and vertices.

Referenced by prepare_mesh().

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◆ n_edges()

int polyfem::mesh::NCMesh2D::n_edges ( ) const
inlineoverridevirtual

number of edges

Returns
number of edges

Implements polyfem::mesh::Mesh.

Definition at line 169 of file NCMesh2D.hpp.

References edges.

Referenced by build_index_mapping(), compute_boundary_ids(), compute_boundary_ids(), compute_boundary_ids(), compute_boundary_ids(), compute_boundary_ids(), compute_boundary_ids(), and set_boundary_ids().

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◆ n_face_neighbors()

int polyfem::mesh::NCMesh2D::n_face_neighbors ( const int  e_id) const
inline

Definition at line 214 of file NCMesh2D.hpp.

References edges, and valid_to_all_edge().

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◆ n_face_vertices()

int polyfem::mesh::NCMesh2D::n_face_vertices ( const int  f_id) const
inlineoverridevirtual

number of vertices of a face

Parameters
[in]f_idglobal face id
Returns
number of vertices

Implements polyfem::mesh::Mesh.

Definition at line 187 of file NCMesh2D.hpp.

Referenced by is_boundary_element(), and triangulate_faces().

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◆ n_faces()

int polyfem::mesh::NCMesh2D::n_faces ( ) const
inlineoverridevirtual

number of faces

Returns
number of faces

Implements polyfem::mesh::Mesh.

Definition at line 168 of file NCMesh2D.hpp.

References n_elements.

Referenced by append(), attach_higher_order_nodes(), compute_body_ids(), compute_elements_tag(), set_body_ids(), triangulate_faces(), and update_elements_tag().

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◆ n_follower_edges()

int polyfem::mesh::NCMesh2D::n_follower_edges ( const int  e_id) const
inline

Definition at line 208 of file NCMesh2D.hpp.

References adj_prepared, edges, and valid_to_all_edge().

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◆ n_vertices()

int polyfem::mesh::NCMesh2D::n_vertices ( ) const
inlineoverridevirtual

number of vertices

Returns
number of vertices

Implements polyfem::mesh::Mesh.

Definition at line 177 of file NCMesh2D.hpp.

References vertices.

Referenced by append(), build_index_mapping(), and triangulate_faces().

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◆ normalize()

void polyfem::mesh::NCMesh2D::normalize ( )
overridevirtual

normalize the mesh

Implements polyfem::mesh::Mesh.

Definition at line 683 of file NCMesh2D.cpp.

References bounding_box(), and vertices.

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◆ operator=() [1/2]

NCMesh2D & polyfem::mesh::NCMesh2D::operator= ( const NCMesh2D )
default

◆ operator=() [2/2]

NCMesh2D & polyfem::mesh::NCMesh2D::operator= ( NCMesh2D &&  )
default

◆ point()

RowVectorNd polyfem::mesh::NCMesh2D::point ( const int  global_index) const
inlineoverridevirtual

point coordinates

Parameters
[in]global_indexglobal vertex index
Returns
RowVectorNd

Implements polyfem::mesh::Mesh.

Definition at line 245 of file NCMesh2D.hpp.

References index_prepared, valid_to_all_vertex(), and vertices.

Referenced by edge_barycenter(), edge_length(), edge_node(), face_node(), and triangulate_faces().

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◆ prepare_mesh()

void polyfem::mesh::NCMesh2D::prepare_mesh ( )
inlineoverridevirtual

method used to finalize the mesh.

It computes the cached stuff used in navigation

Reimplemented from polyfem::mesh::Mesh.

Definition at line 292 of file NCMesh2D.hpp.

References adj_prepared, build_edge_follower_chain(), build_element_vertex_adjacency(), build_index_mapping(), compute_elements_tag(), and mark_boundary().

Referenced by append(), build_from_matrices(), and load().

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◆ refine()

void polyfem::mesh::NCMesh2D::refine ( const int  n_refinement,
const double  t 
)
overridevirtual

refine the mesh

Parameters
[in]n_refinementnumber of refinements
[in]tposition of the refinement location (0.5 for standard refinement)

Implements polyfem::mesh::Mesh.

Definition at line 23 of file NCMesh2D.cpp.

References elements, refine(), and refine_element().

Referenced by refine().

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◆ refine_element()

void polyfem::mesh::NCMesh2D::refine_element ( int  id_full)

Definition at line 178 of file NCMesh2D.cpp.

References add_element(), adj_prepared, edge_id, edges, elements, find_edge(), find_vertex(), get_edge(), get_vertex(), index_prepared, n_elements, refineHistory, and vertices.

Referenced by refine(), and refine_elements().

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◆ refine_elements()

void polyfem::mesh::NCMesh2D::refine_elements ( const std::vector< int > &  ids)

Definition at line 244 of file NCMesh2D.cpp.

References refine_element(), and valid_to_all_elem().

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◆ save()

bool polyfem::mesh::NCMesh2D::save ( const std::string &  path) const
inlineoverridevirtual

Implements polyfem::mesh::Mesh.

Definition at line 224 of file NCMesh2D.hpp.

◆ set_body_ids()

void polyfem::mesh::NCMesh2D::set_body_ids ( const std::vector< int > &  body_ids)
overridevirtual

Set the volume sections.

Parameters
[in]body_idsvector of labels, one per element

Reimplemented from polyfem::mesh::Mesh.

Definition at line 781 of file NCMesh2D.cpp.

References elements, n_faces(), and valid_to_all_elem().

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◆ set_boundary_ids()

void polyfem::mesh::NCMesh2D::set_boundary_ids ( const std::vector< int > &  boundary_ids)
overridevirtual

Set the boundary selection from a vector.

Parameters
[in]boundary_idsvector one value per element

Reimplemented from polyfem::mesh::Mesh.

Definition at line 790 of file NCMesh2D.cpp.

References edges, n_edges(), and valid_to_all_edge().

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◆ set_point()

void polyfem::mesh::NCMesh2D::set_point ( const int  global_index,
const RowVectorNd p 
)
overridevirtual

Set the point.

Parameters
[in]global_indexglobal vertex index
[in]pvalue

Implements polyfem::mesh::Mesh.

Definition at line 712 of file NCMesh2D.cpp.

References valid_to_all_vertex(), and vertices.

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◆ switch_edge()

Navigation::Index polyfem::mesh::NCMesh2D::switch_edge ( Navigation::Index  idx) const
overridevirtual

Implements polyfem::mesh::Mesh2D.

Definition at line 644 of file NCMesh2D.cpp.

References all_to_valid_edge(), polyfem::mesh::Navigation::Index::edge, edges, elements, polyfem::mesh::Navigation::Index::face, polyfem::mesh::Navigation::Index::face_corner, polyfem::mesh::find(), valid_to_all_elem(), and polyfem::mesh::Navigation::Index::vertex.

Referenced by face_node().

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◆ switch_face()

Navigation::Index polyfem::mesh::NCMesh2D::switch_face ( Navigation::Index  idx) const
overridevirtual

Implements polyfem::mesh::Mesh2D.

Definition at line 667 of file NCMesh2D.cpp.

References polyfem::mesh::Navigation::Index::edge, edges, polyfem::mesh::Navigation::Index::face, polyfem::mesh::Navigation::Index::face_corner, valid_to_all_edge(), valid_to_all_elem(), and polyfem::mesh::Navigation::Index::vertex.

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◆ switch_vertex()

Navigation::Index polyfem::mesh::NCMesh2D::switch_vertex ( Navigation::Index  idx) const
overridevirtual

Implements polyfem::mesh::Mesh2D.

Definition at line 620 of file NCMesh2D.cpp.

References all_to_valid_vertex(), polyfem::mesh::Navigation::Index::edge, edges, elements, polyfem::mesh::Navigation::Index::face, polyfem::mesh::Navigation::Index::face_corner, valid_to_all_edge(), valid_to_all_elem(), valid_to_all_vertex(), and polyfem::mesh::Navigation::Index::vertex.

Referenced by edge_node(), and face_node().

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◆ traverse_edge()

void polyfem::mesh::NCMesh2D::traverse_edge ( Eigen::Vector2i  v,
double  p1,
double  p2,
int  depth,
std::vector< follower_edge > &  list 
) const
protected

Definition at line 522 of file NCMesh2D.cpp.

References edges, find_edge(), find_vertex(), and traverse_edge().

Referenced by build_edge_follower_chain(), and traverse_edge().

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◆ triangulate_faces()

void polyfem::mesh::NCMesh2D::triangulate_faces ( Eigen::MatrixXi &  tris,
Eigen::MatrixXd &  pts,
std::vector< int > &  ranges 
) const
overridevirtual

generate a triangular representation of every face

Parameters
[out]tristriangles connectivity
[out]ptstriangles vertices
[out]rangesconnection to original faces

Implements polyfem::mesh::Mesh.

Definition at line 725 of file NCMesh2D.cpp.

References face_vertex(), n_face_vertices(), n_faces(), n_vertices(), and point().

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◆ update_elements_tag()

void polyfem::mesh::NCMesh2D::update_elements_tag ( )
overridevirtual

Update elements types.

Reimplemented from polyfem::mesh::Mesh.

Definition at line 707 of file NCMesh2D.cpp.

References polyfem::mesh::Mesh::elements_tag_, n_faces(), and polyfem::mesh::SIMPLEX.

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◆ valid_to_all_edge()

int polyfem::mesh::NCMesh2D::valid_to_all_edge ( const int  id) const
inlineprotected

Definition at line 340 of file NCMesh2D.hpp.

References index_prepared, and valid_to_all_edgeMap.

Referenced by compute_boundary_ids(), compute_boundary_ids(), compute_boundary_ids(), compute_boundary_ids(), compute_boundary_ids(), compute_boundary_ids(), edge_vertex(), face_neighbor(), get_boundary_id(), is_boundary_edge(), leader_edge_of_edge(), n_face_neighbors(), n_follower_edges(), set_boundary_ids(), switch_face(), and switch_vertex().

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◆ valid_to_all_elem()

int polyfem::mesh::NCMesh2D::valid_to_all_elem ( const int  id) const
inlineprotected

Definition at line 353 of file NCMesh2D.hpp.

References index_prepared, and valid_to_all_elemMap.

Referenced by cell_vertex(), compute_body_ids(), face_edge(), face_ref_level(), face_vertex(), get_body_id(), get_index_from_face(), refine_elements(), set_body_ids(), switch_edge(), switch_face(), and switch_vertex().

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◆ valid_to_all_vertex()

int polyfem::mesh::NCMesh2D::valid_to_all_vertex ( const int  id) const
inlineprotected

Definition at line 327 of file NCMesh2D.hpp.

References index_prepared, and valid_to_all_vertexMap.

Referenced by is_boundary_vertex(), leader_edge_of_vertex(), point(), set_point(), and switch_vertex().

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Member Data Documentation

◆ adj_prepared

bool polyfem::mesh::NCMesh2D::adj_prepared = false
protected

◆ all_to_valid_edgeMap

std::vector<int> polyfem::mesh::NCMesh2D::all_to_valid_edgeMap
protected

Definition at line 401 of file NCMesh2D.hpp.

Referenced by all_to_valid_edge(), and build_index_mapping().

◆ all_to_valid_elemMap

std::vector<int> polyfem::mesh::NCMesh2D::all_to_valid_elemMap
protected

Definition at line 399 of file NCMesh2D.hpp.

Referenced by all_to_valid_elem(), and build_index_mapping().

◆ all_to_valid_vertexMap

std::vector<int> polyfem::mesh::NCMesh2D::all_to_valid_vertexMap
protected

Definition at line 400 of file NCMesh2D.hpp.

Referenced by all_to_valid_vertex(), and build_index_mapping().

◆ edgeMap

std::unordered_map<Eigen::Vector2i, int, ArrayHasher2D> polyfem::mesh::NCMesh2D::edgeMap
protected

Definition at line 397 of file NCMesh2D.hpp.

Referenced by build_from_matrices(), find_edge(), and get_edge().

◆ edges

◆ elementAdj

Eigen::SparseMatrix<bool, Eigen::RowMajor> polyfem::mesh::NCMesh2D::elementAdj
protected

Definition at line 406 of file NCMesh2D.hpp.

◆ elements

◆ index_prepared

◆ midpointMap

std::unordered_map<Eigen::Vector2i, int, ArrayHasher2D> polyfem::mesh::NCMesh2D::midpointMap
protected

Definition at line 396 of file NCMesh2D.hpp.

Referenced by build_from_matrices(), find_vertex(), and get_vertex().

◆ n_elements

int polyfem::mesh::NCMesh2D::n_elements = 0
protected

◆ refineHistory

std::vector<int> polyfem::mesh::NCMesh2D::refineHistory
protected

Definition at line 403 of file NCMesh2D.hpp.

Referenced by build_from_matrices(), coarsen_element(), and refine_element().

◆ valid_to_all_edgeMap

std::vector<int> polyfem::mesh::NCMesh2D::valid_to_all_edgeMap
protected

Definition at line 401 of file NCMesh2D.hpp.

Referenced by build_index_mapping(), and valid_to_all_edge().

◆ valid_to_all_elemMap

std::vector<int> polyfem::mesh::NCMesh2D::valid_to_all_elemMap
protected

Definition at line 399 of file NCMesh2D.hpp.

Referenced by build_index_mapping(), and valid_to_all_elem().

◆ valid_to_all_vertexMap

std::vector<int> polyfem::mesh::NCMesh2D::valid_to_all_vertexMap
protected

Definition at line 400 of file NCMesh2D.hpp.

Referenced by build_index_mapping(), and valid_to_all_vertex().

◆ vertices


The documentation for this class was generated from the following files: