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NonlinearElasticVarForm.cpp
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30#include <igl/Timer.h>
31#include <igl/edges.h>
32
33#include <ipc/ipc.hpp>
34
35#include <polysolve/linear/Solver.hpp>
36#include <polysolve/nonlinear/Solver.hpp>
37
38#include <algorithm>
39#include <cmath>
40#include <limits>
41
42namespace polyfem::varform
43{
44 using namespace solver;
45 using namespace time_integrator;
46
47 void NonlinearElasticVarForm::init(const std::string &formulation, const Units &units, const json &args, const std::string &out_path)
48 {
49 json clean_args = args;
50 const bool contact_dhat_was_explicit = clean_args["contact"].value("_dhat_was_explicit", false);
51 clean_args["contact"].erase("_dhat_was_explicit");
52 ElasticVarForm::init(formulation, units, clean_args, out_path);
53 contact_dhat_was_explicit_ = contact_dhat_was_explicit;
54 }
55
57 {
59 collision_mesh = ipc::CollisionMesh();
62 forms.clear();
64 damping_assembler = nullptr;
65 damping_prev_assembler = nullptr;
67 }
68
69 void NonlinearElasticVarForm::load_mesh(const mesh::Mesh &mesh, const json &args)
70 {
72
73 logger().info("Loading obstacles...");
75 units,
76 args["geometry"],
77 utils::json_as_array(args["boundary_conditions"]["obstacle_displacements"]),
78 utils::json_as_array(args["boundary_conditions"]["dirichlet_boundary"]),
79 root_path, mesh.dimension());
80 }
81
83 {
84 auto space = ElasticVarForm::output_space();
85 space.collision_mesh = is_contact_enabled() ? &collision_mesh : nullptr;
86 space.obstacle = &obstacle;
87 return space;
88 }
89
90 std::vector<io::OutputField> NonlinearElasticVarForm::output_fields(
91 const io::OutputSample &sample,
92 const Eigen::MatrixXd &solution,
93 const io::OutputFieldOptions &options) const
94 {
95 std::vector<io::OutputField> fields = elastic_output_fields(
96 sample, solution, options, &obstacle, solve_data.time_integrator.get(),
98 if (!mesh_ || !problem || solution.size() <= 0)
99 return fields;
101 return fields;
102
103 const int actual_dim = problem->is_scalar() ? 1 : mesh_->dimension();
104 const auto &paraview_options = args["output"]["paraview"]["options"];
105 const bool explicit_fields = !options.fields.empty();
106
107 const auto has_field = [&](const std::string &name) {
108 return std::any_of(fields.begin(), fields.end(), [&](const io::OutputField &field) {
109 return field.association == io::OutputField::Association::Point && field.name == name;
110 });
111 };
112
113 const auto append_collision_dof_field = [&](const std::string &name, const Eigen::MatrixXd &dof_values) {
114 if (has_field(name) || dof_values.size() <= 0)
115 return;
116
117 Eigen::MatrixXd values = collision_mesh.map_displacements(utils::unflatten(dof_values, actual_dim));
118 if (values.rows() == sample.points.rows())
119 fields.push_back({name, values, io::OutputField::Association::Point});
120 };
121
122 const auto append_collision_form_force = [&](const std::string &name, const std::shared_ptr<solver::Form> &form) {
123 if (!form || !form->enabled() || sample.points.rows() != collision_mesh.rest_positions().rows())
124 return;
125
126 Eigen::VectorXd force;
127 form->first_derivative(solution.col(0), force);
128 const double acceleration_scaling =
129 solve_data.time_integrator ? solve_data.time_integrator->acceleration_scaling() : 1;
130 force *= -1.0 / acceleration_scaling;
131 append_collision_dof_field(name, force);
132 };
133
134 if (paraview_options["forces"] && !problem->is_scalar())
135 {
136 const double s = solve_data.time_integrator ? solve_data.time_integrator->acceleration_scaling() : 1;
137 for (const auto &[name, form] : solve_data.named_forms())
138 {
139 const std::string field_name = name + "_forces";
140 if (!options.export_field(field_name))
141 continue;
142
143 Eigen::VectorXd force;
144 if (form && form->enabled())
145 {
146 form->first_derivative(solution, force);
147 force *= -1.0 / s;
148 }
149 else
150 {
151 force.setZero(solution.size());
152 }
153 append_collision_dof_field(field_name, force);
154 }
155 }
156
157 if (options.export_field("gradient_of_elastic_potential") && solve_data.elastic_form)
158 {
159 Eigen::VectorXd potential_grad;
160 solve_data.elastic_form->first_derivative(solution, potential_grad);
161 append_collision_dof_field("gradient_of_elastic_potential", potential_grad);
162 }
163
164 if (options.export_field("gradient_of_contact_potential") && solve_data.contact_form && solve_data.contact_form->weight() > 0)
165 {
166 Eigen::VectorXd potential_grad;
167 solve_data.contact_form->first_derivative(solution, potential_grad);
168 potential_grad *= -solve_data.contact_form->barrier_stiffness() / solve_data.contact_form->weight();
169 append_collision_dof_field("gradient_of_contact_potential", potential_grad);
170 }
171
172 if (options.export_field("displacement"))
173 append_collision_dof_field("displacement", solution);
174 if (options.export_field("solution"))
175 append_collision_dof_field("solution", solution);
176
177 if ((paraview_options["contact_forces"] || explicit_fields) && options.export_field("contact_forces"))
178 append_collision_form_force("contact_forces", solve_data.contact_form);
179 if ((paraview_options["friction_forces"] || explicit_fields) && options.export_field("friction_forces"))
180 append_collision_form_force("friction_forces", solve_data.friction_form);
181 if ((paraview_options["normal_adhesion_forces"] || explicit_fields) && options.export_field("normal_adhesion_forces"))
182 append_collision_form_force("normal_adhesion_forces", solve_data.normal_adhesion_form);
183 if ((paraview_options["tangential_adhesion_forces"] || explicit_fields) && options.export_field("tangential_adhesion_forces"))
184 append_collision_form_force("tangential_adhesion_forces", solve_data.tangential_adhesion_form);
185
186 if (explicit_fields
187 && options.export_field("adaptive_dhat")
188 && args["contact"]["use_gcp_formulation"]
189 && args["contact"]["use_adaptive_dhat"])
190 {
191 const auto smooth_contact = std::dynamic_pointer_cast<solver::SmoothContactForm>(solve_data.contact_form);
192 if (smooth_contact)
193 {
194 const auto &set = smooth_contact->collision_set();
195 if (actual_dim == 2)
196 {
197 Eigen::VectorXd dhats(collision_mesh.num_edges());
198 for (int e = 0; e < dhats.size(); ++e)
199 dhats(e) = set.get_edge_dhat(e);
200 fields.push_back({"dhat", dhats, io::OutputField::Association::Cell});
201 }
202 else
203 {
204 Eigen::VectorXd dhats(collision_mesh.num_faces());
205 for (int f = 0; f < dhats.size(); ++f)
206 dhats(f) = set.get_face_dhat(f);
207 fields.push_back({"dhat_face", dhats, io::OutputField::Association::Cell});
208
209 Eigen::VectorXd vertex_dhats(collision_mesh.num_vertices());
210 for (int v = 0; v < vertex_dhats.size(); ++v)
211 vertex_dhats(v) = set.get_vert_dhat(v);
212 fields.push_back({"dhat_vert", vertex_dhats, io::OutputField::Association::Point});
213 }
214 }
215 }
216
217 return fields;
218 }
219
220 void NonlinearElasticVarForm::build_basis(mesh::Mesh &mesh, const bool iso_parametric, const json &args)
221 {
222 ElasticVarForm::build_basis(mesh, iso_parametric, args);
223
224 // Legacy nonlinear/contact code assumes the displacement space includes obstacle vertices.
225 // The shared build path only counts FE bases, so extend it here
226 // before constructing collision/contact state.
227 const int n_fe_bases = space_.n_bases;
228 space_.n_bases += obstacle.n_vertices();
229
230 logger().info("Building collision mesh...");
231 build_collision_mesh(mesh, args);
232 preprocess_contact_parameters();
233 // FIXME!! handle periodic collision mesh
234 // if (periodic_bc && args["contact"]["periodic"])
235 // build_periodic_collision_mesh();
236 logger().info("Done!");
237
238 for (int i = n_fe_bases; i < space_.n_bases; ++i)
239 {
240 for (int d = 0; d < mesh.dimension(); ++d)
241 boundary_.boundary_nodes.push_back(i * mesh.dimension() + d);
242 }
243
244 boundary_.normalize_boundary_nodes();
245 }
246
247 void NonlinearElasticVarForm::preprocess_contact_parameters()
248 {
249 if (!is_contact_enabled())
250 return;
251
252 double min_boundary_edge_length = std::numeric_limits<double>::max();
253 for (const auto &edge : collision_mesh.edges().rowwise())
254 {
255 const VectorNd v0 = collision_mesh.rest_positions().row(edge(0));
256 const VectorNd v1 = collision_mesh.rest_positions().row(edge(1));
257 min_boundary_edge_length = std::min(min_boundary_edge_length, (v1 - v0).norm());
258 }
259
260 double dhat = Units::convert(args["contact"]["dhat"], units.length());
261 args["contact"]["epsv"] = Units::convert(args["contact"]["epsv"], units.velocity());
262
263 if (!contact_dhat_was_explicit_
264 && std::isfinite(min_boundary_edge_length)
265 && dhat > min_boundary_edge_length)
266 {
267 dhat = args["contact"]["dhat_percentage"].get<double>() * min_boundary_edge_length;
268 logger().info("dhat set to {}", dhat);
269 }
270 else if (std::isfinite(min_boundary_edge_length) && dhat > min_boundary_edge_length)
271 {
272 logger().warn("dhat larger than min boundary edge, {} > {}", dhat, min_boundary_edge_length);
273 }
274
275 args["contact"]["dhat"] = dhat;
276 }
277
278 void NonlinearElasticVarForm::build_rhs_assembler()
279 {
280 json rhs_solver_params = args["solver"]["linear"];
281 if (!rhs_solver_params.contains("Pardiso"))
282 rhs_solver_params["Pardiso"] = {};
283 rhs_solver_params["Pardiso"]["mtype"] = -2;
284
285 const int size = problem->is_scalar() ? 1 : mesh_->dimension();
286
287 solve_data.rhs_assembler = std::make_shared<assembler::RhsAssembler>(
288 *primary_assembler_, *mesh_, &obstacle,
289 boundary_.dirichlet_nodes, boundary_.neumann_nodes,
290 boundary_.dirichlet_nodes_position, boundary_.neumann_nodes_position,
291 space_.n_bases, size, space_.basis_list(), space_.geometry_basis_list(), mass_ass_vals_cache_, *problem,
292 args["space"]["advanced"]["bc_method"],
293 rhs_solver_params,
294 /*fe_space_id=*/-1);
295 rhs_assembler_ = solve_data.rhs_assembler;
296 }
297
298 void NonlinearElasticVarForm::build_collision_mesh(
299 const mesh::Mesh &mesh,
300 const json &args)
301 {
302 build_collision_mesh(
303 mesh, space_.n_bases, space_.basis_list(), space_.geometry_basis_list(), boundary_.total_local_boundary, obstacle,
304 args, [this](const std::string &p) { return utils::resolve_path(p, root_path, false); },
305 space_.space_in_node_to_node, collision_mesh);
306 }
307
308 void NonlinearElasticVarForm::build_collision_mesh(
309 const mesh::Mesh &mesh,
310 const int n_bases,
311 const std::vector<basis::ElementBases> &bases,
312 const std::vector<basis::ElementBases> &geom_bases,
313 const std::vector<mesh::LocalBoundary> &total_local_boundary,
314 const mesh::Obstacle &obstacle,
315 const json &args,
316 const std::function<std::string(const std::string &)> &resolve_input_path,
317 const Eigen::VectorXi &in_node_to_node,
318 ipc::CollisionMesh &collision_mesh)
319 {
320 Eigen::MatrixXd collision_vertices;
321 Eigen::VectorXi collision_codim_vids;
322 Eigen::MatrixXi collision_edges, collision_triangles;
323 std::vector<Eigen::Triplet<double>> displacement_map_entries;
324
325 if (args.contains("/contact/collision_mesh"_json_pointer)
326 && args.at("/contact/collision_mesh/enabled"_json_pointer).get<bool>())
327 {
328 const json collision_mesh_args = args.at("/contact/collision_mesh"_json_pointer);
329 if (collision_mesh_args.contains("linear_map"))
330 {
331 assert(displacement_map_entries.empty());
332 assert(collision_mesh_args.contains("mesh"));
333 const std::string root_path = utils::json_value<std::string>(args, "root_path", "");
334 // TODO: handle transformation per geometry
335 const json transformation = utils::json_as_array(args["geometry"])[0]["transformation"];
337 utils::resolve_path(collision_mesh_args["mesh"], root_path),
338 utils::resolve_path(collision_mesh_args["linear_map"], root_path),
339 in_node_to_node, transformation, collision_vertices, collision_codim_vids,
340 collision_edges, collision_triangles, displacement_map_entries);
341 }
342 else if (collision_mesh_args.contains("max_edge_length"))
343 {
344 logger().debug(
345 "Building collision proxy with max edge length={} ...",
346 collision_mesh_args["max_edge_length"].get<double>());
347 igl::Timer timer;
348 timer.start();
350 bases, geom_bases, total_local_boundary, n_bases, mesh.dimension(),
351 collision_mesh_args["max_edge_length"], collision_vertices,
352 collision_triangles, displacement_map_entries,
353 collision_mesh_args["tessellation_type"]);
354 if (collision_triangles.size())
355 igl::edges(collision_triangles, collision_edges);
356 timer.stop();
357 logger().debug(fmt::format(
358 std::locale("en_US.UTF-8"),
359 "Done (took {:g}s, {:L} vertices, {:L} triangles)",
360 timer.getElapsedTime(),
361 collision_vertices.rows(), collision_triangles.rows()));
362 }
363 else
364 {
366 mesh, n_bases - obstacle.n_vertices(), bases, total_local_boundary,
367 collision_vertices, collision_edges, collision_triangles, displacement_map_entries);
368 }
369 }
370 else
371 {
373 mesh, n_bases - obstacle.n_vertices(), bases, total_local_boundary,
374 collision_vertices, collision_edges, collision_triangles, displacement_map_entries);
375 }
376
377 std::vector<bool> is_orientable_vertex(collision_vertices.rows(), true);
378
379 // n_bases already contains the obstacle vertices
380 const int num_fe_nodes = n_bases - obstacle.n_vertices();
381 const int num_fe_collision_vertices = collision_vertices.rows();
382 assert(collision_edges.size() == 0 || collision_edges.maxCoeff() < num_fe_collision_vertices);
383 assert(collision_triangles.size() == 0 || collision_triangles.maxCoeff() < num_fe_collision_vertices);
384
385 // Append the obstacles to the collision mesh
386 if (obstacle.n_vertices() > 0)
387 {
388 utils::append_rows(collision_vertices, obstacle.v());
389 utils::append_rows(collision_codim_vids, obstacle.codim_v().array() + num_fe_collision_vertices);
390 utils::append_rows(collision_edges, obstacle.e().array() + num_fe_collision_vertices);
391 utils::append_rows(collision_triangles, obstacle.f().array() + num_fe_collision_vertices);
392
393 for (int i = 0; i < obstacle.n_vertices(); i++)
394 {
395 is_orientable_vertex.push_back(false);
396 }
397
398 if (!displacement_map_entries.empty())
399 {
400 displacement_map_entries.reserve(displacement_map_entries.size() + obstacle.n_vertices());
401 for (int i = 0; i < obstacle.n_vertices(); i++)
402 {
403 displacement_map_entries.emplace_back(num_fe_collision_vertices + i, num_fe_nodes + i, 1.0);
404 }
405 }
406 }
407
408 std::vector<bool> is_on_surface = ipc::CollisionMesh::construct_is_on_surface(
409 collision_vertices.rows(), collision_edges);
410 for (const int vid : collision_codim_vids)
411 {
412 is_on_surface[vid] = true;
413 }
414
415 Eigen::SparseMatrix<double> displacement_map;
416 if (!displacement_map_entries.empty())
417 {
418 displacement_map.resize(collision_vertices.rows(), n_bases);
419 displacement_map.setFromTriplets(displacement_map_entries.begin(), displacement_map_entries.end());
420 }
421
422 collision_mesh = ipc::CollisionMesh(
423 is_on_surface, is_orientable_vertex, collision_vertices, collision_edges, collision_triangles,
424 displacement_map);
425
426 collision_mesh.can_collide = [&collision_mesh, num_fe_collision_vertices](size_t vi, size_t vj) {
427 // obstacles do not collide with other obstacles
428 return collision_mesh.to_full_vertex_id(vi) < num_fe_collision_vertices
429 || collision_mesh.to_full_vertex_id(vj) < num_fe_collision_vertices;
430 };
431
432 collision_mesh.init_area_jacobians();
433 }
434
435 std::shared_ptr<assembler::PressureAssembler> NonlinearElasticVarForm::build_pressure_assembler() const
436 {
437 const int size = problem->is_scalar() ? 1 : mesh_->dimension();
438
439 return std::make_shared<assembler::PressureAssembler>(
440 *primary_assembler_, *mesh_, obstacle,
441 boundary_.local_pressure_boundary,
442 boundary_.local_pressure_cavity,
443 boundary_.boundary_nodes,
444 elastic_primitive_to_node(), elastic_node_to_primitive(),
445 space_.n_bases, size, space_.basis_list(), space_.geometry_basis_list(), *problem);
446 }
447
448 void NonlinearElasticStaticVarForm::solve_problem(Eigen::MatrixXd &sol)
449 {
450 stats.spectrum.setZero();
451
452 igl::Timer timer;
453 timer.start();
454 logger().info("Solving {}", primary_assembler_->name());
455
456 {
457 POLYFEM_SCOPED_TIMER("Setup RHS");
458
459 // FIXME
460 // read_initial_x_from_file(
461 // resolve_input_path(args["input"]["data"]["state"]), "u",
462 // args["input"]["data"]["reorder"], in_node_to_node,
463 // mesh->dimension(), solution);
464
465 if (sol.size() <= 0)
466 initial_elastic_solution(sol);
467
468 if (sol.cols() > 1) // ignore previous solutions
469 sol.conservativeResize(Eigen::NoChange, 1);
470 }
471 init_solve(sol, 1.0);
472
473 solve_tensor_nonlinear(0, sol, true);
474
475 const std::string state_path = resolve_output_path(args["output"]["data"]["state"]);
476 if (!state_path.empty())
477 io::write_matrix(state_path, "u", sol);
478
479 timer.stop();
480 timings.solving_time = timer.getElapsedTime();
481 logger().info(" took {}s", timings.solving_time);
482 }
483
484 void NonlinearElasticTransientVarForm::solve_problem(Eigen::MatrixXd &sol)
485 {
486 const bool save_stats = args["output"]["stats"];
487 stats.spectrum.setZero();
488
489 igl::Timer timer;
490 timer.start();
491 logger().info("Solving {}", primary_assembler_->name());
492
493 {
494 POLYFEM_SCOPED_TIMER("Setup RHS");
495
496 // FIXME
497 // read_initial_x_from_file(
498 // resolve_input_path(args["input"]["data"]["state"]), "u",
499 // args["input"]["data"]["reorder"], in_node_to_node,
500 // mesh->dimension(), solution);
501
502 if (sol.size() <= 0)
503 initial_elastic_solution(sol);
504
505 if (sol.cols() > 1) // ignore previous solutions
506 sol.conservativeResize(Eigen::NoChange, 1);
507 }
508 init_solve(sol, t0 + dt);
509
510 // Write the total energy to a CSV file
511 int save_i = 0;
512
513 std::unique_ptr<io::EnergyCSVWriter> energy_csv = nullptr;
514 std::unique_ptr<io::RuntimeStatsCSVWriter> stats_csv = nullptr;
515
516 if (save_stats)
517 {
518 logger().debug("Saving nl stats to {} and {}", resolve_output_path("energy.csv"), resolve_output_path("stats.csv"));
519 energy_csv = std::make_unique<io::EnergyCSVWriter>(resolve_output_path("energy.csv"), solve_data);
520 const io::OutputSpace space = output_space();
521 stats_csv = std::make_unique<io::RuntimeStatsCSVWriter>(
522 resolve_output_path("stats.csv"),
523 space_.n_bases,
524 space.mesh ? space.mesh->n_elements() : 0,
525 t0, dt);
526 }
527
528 // Save the initial solution
529 if (energy_csv)
530 energy_csv->write(save_i, sol);
531 save_timestep(t0, 0, t0, dt, sol);
532
533 save_i++;
534
535 for (int t = 1; t <= time_steps; ++t)
536 {
537 double forward_solve_time = 0, remeshing_time = 0, global_relaxation_time = 0;
538
539 {
540 POLYFEM_SCOPED_TIMER(forward_solve_time);
541 solve_tensor_nonlinear(t, sol, true);
542 }
543
544 // Always save the solution for consistency
545 if (energy_csv)
546 energy_csv->write(save_i, sol);
547 save_timestep(t0 + dt * t, t, t0, dt, sol);
548 save_i++;
549
550 {
551 POLYFEM_SCOPED_TIMER("Update quantities");
552
553 solve_data.time_integrator->update_quantities(sol);
554
555 solve_data.nl_problem->update_quantities(t0 + (t + 1) * dt, sol);
556
557 solve_data.update_dt();
558 solve_data.update_barrier_stiffness(sol);
559 }
560
561 logger().info("{}/{} t={}", t, time_steps, t0 + dt * t);
562 notify_time_step(t, time_steps, t0, dt);
563
564 save_elastic_step_state(t0, dt, t, solve_data.time_integrator.get());
565 if (stats_csv)
566 stats_csv->write(t, forward_solve_time, remeshing_time, global_relaxation_time);
567 }
568
569 timer.stop();
570 timings.solving_time = timer.getElapsedTime();
571 logger().info(" took {}s", timings.solving_time);
572 }
573
574 void NonlinearElasticVarForm::init_forms(const json &args, const int dim, Eigen::MatrixXd &sol, const double t)
575 {
576 damping_assembler = std::make_shared<assembler::ViscousDamping>();
577 set_materials(*damping_assembler, mesh_->dimension());
578
579 elasticity_pressure_assembler = build_pressure_assembler();
580
581 // for backward solve
582 damping_prev_assembler = std::make_shared<assembler::ViscousDampingPrev>();
583 set_materials(*damping_prev_assembler, mesh_->dimension());
584
585 const ElementInversionCheck check_inversion = args["solver"]["advanced"]["check_inversion"];
586
587 // NOTE: some stuff are legacy and hardcoded to be off
588 forms = solve_data.init_forms(
589 // General
590 units,
591 dim, t, space_.space_in_node_to_node,
592 // Elastic form
593 space_.n_bases, *space_.bases, space_.geometry_basis_list(), *primary_assembler_, ass_vals_cache_, mass_ass_vals_cache_, args["solver"]["advanced"]["jacobian_threshold"], check_inversion,
594 args["solver"]["advanced"]["conservative_max_iter"],
595 // Body form
596 0, boundary_.boundary_nodes, boundary_.local_boundary,
597 boundary_.local_neumann_boundary,
598 elastic_boundary_samples(), rhs_, sol, mass_assembler_->density(),
599 // Pressure form
600 boundary_.local_pressure_boundary, boundary_.local_pressure_cavity, elasticity_pressure_assembler,
601 // Inertia form
602 args.value("/time/quasistatic"_json_pointer, true), mass_,
603 damping_assembler->is_valid() ? damping_assembler : nullptr,
604 // Lagged regularization form
605 args["solver"]["advanced"]["lagged_regularization_weight"],
606 args["solver"]["advanced"]["lagged_regularization_iterations"],
607 // Augmented lagrangian form
608 obstacle.ndof(), args["constraints"]["hard"], args["constraints"]["soft"],
609 // Contact form
610 args["contact"]["enabled"], collision_mesh, args["contact"]["dhat"],
611 avg_mass_, args["contact"]["use_convergent_formulation"] ? bool(args["contact"]["use_area_weighting"]) : false,
612 args["contact"]["use_convergent_formulation"] ? bool(args["contact"]["use_improved_max_operator"]) : false,
613 args["contact"]["use_convergent_formulation"] ? bool(args["contact"]["use_physical_barrier"]) : false,
614 args["solver"]["contact"]["barrier_stiffness"],
615 args["solver"]["contact"]["initial_barrier_stiffness"],
616 args["solver"]["contact"]["CCD"]["broad_phase"],
617 args["solver"]["contact"]["CCD"]["tolerance"],
618 args["solver"]["contact"]["CCD"]["max_iterations"],
619 false,
620 // Smooth Contact Form
621 args["contact"]["use_gcp_formulation"],
622 args["contact"]["alpha_t"],
623 args["contact"]["alpha_n"],
624 args["contact"]["use_adaptive_dhat"],
625 args["contact"]["min_distance_ratio"],
626 // Normal Adhesion Form
627 args["contact"]["adhesion"]["adhesion_enabled"],
628 args["contact"]["adhesion"]["dhat_p"],
629 args["contact"]["adhesion"]["dhat_a"],
630 args["contact"]["adhesion"]["adhesion_strength"],
631 // Tangential Adhesion Form
632 args["contact"]["adhesion"]["tangential_adhesion_coefficient"],
633 args["contact"]["adhesion"]["epsa"],
634 args["solver"]["contact"]["tangential_adhesion_iterations"],
635 // Homogenization
637 // Periodic contact
638 false, Eigen::VectorXi(), nullptr,
639 // Friction form
640 args["contact"]["friction_coefficient"],
641 args["contact"]["epsv"],
642 args["solver"]["contact"]["friction_iterations"],
643 // Rayleigh damping form
644 args["solver"]["rayleigh_damping"]);
645
646 for (const auto &form : forms)
647 form->set_output_dir(output_path);
648
649 if (solve_data.contact_form != nullptr)
650 solve_data.contact_form->save_ccd_debug_meshes = args["output"]["advanced"]["save_ccd_debug_meshes"];
651 }
652
653 void NonlinearElasticVarForm::init_solve(Eigen::MatrixXd &sol, const double t)
654 {
655 assert(sol.cols() == 1);
656 assert(!problem->is_scalar()); // tensor
657
658 // FIXME
659 // if (optimization_enabled != solver::CacheLevel::None)
660 // {
661 // if (initial_sol_update.size() == ndof())
662 // sol = initial_sol_update;
663 // else
664 // initial_sol_update = sol;
665 // }
666
667 // --------------------------------------------------------------------
668 // Check for initial intersections
669 if (args["contact"]["enabled"])
670 {
671 POLYFEM_SCOPED_TIMER("Check for initial intersections");
672
673 const Eigen::MatrixXd displaced = collision_mesh.displace_vertices(
674 utils::unflatten(sol, mesh_->dimension()));
675
676 if (ipc::has_intersections(collision_mesh, displaced, ipc::create_broad_phase(args["solver"]["contact"]["CCD"]["broad_phase"]).get()))
677 {
679 resolve_output_path("intersection.obj"), displaced,
680 collision_mesh.edges(), collision_mesh.faces());
681 log_and_throw_error("Unable to solve, initial solution has intersections!");
682 }
683 }
684
685 // --------------------------------------------------------------------
686
687 if (problem->is_time_dependent())
688 {
689 POLYFEM_SCOPED_TIMER("Initialize time integrator");
690 solve_data.time_integrator = ImplicitTimeIntegrator::construct_time_integrator(args["time"]["integrator"]);
691
692 Eigen::MatrixXd solution, velocity, acceleration;
693 initial_elastic_solution(solution); // Reload this because we need all previous solutions
694 solution.col(0) = sol; // Make sure the current solution is the same as `sol`
695 assert(solution.rows() == sol.size());
696 initial_velocity(velocity);
697 assert(velocity.rows() == sol.size());
698 initial_acceleration(acceleration);
699 assert(acceleration.rows() == sol.size());
700
701 solve_data.time_integrator->init(solution, velocity, acceleration, dt);
702 assert(solve_data.time_integrator != nullptr);
703 }
704 else
705 {
706 solve_data.time_integrator = nullptr;
707 }
708
709 // --------------------------------------------------------------------
710 // Initialize forms
711
712 // --------------------------------------------------------------------
713 // Initialize nonlinear problems
714
715 init_forms(args, mesh_->dimension(), sol, t);
716
717 double characteristic_length = 0;
718 if (args["solver"]["advanced"]["characteristic_length"] > 0)
719 {
720 characteristic_length = args["solver"]["advanced"]["characteristic_length"];
721 }
722 else
723 {
724 RowVectorNd min, max;
725 mesh_->bounding_box(min, max);
726 characteristic_length = (max - min).norm();
727 }
728
729 double characteristic_force_density = 0;
730 if (args["solver"]["advanced"]["characteristic_force_density"] <= 0)
731 {
732 logger().warn("No user-specified force density was provided, defaulting to 10000.");
733 characteristic_force_density = 10000;
734 }
735 else
736 {
737 characteristic_force_density = args["solver"]["advanced"]["characteristic_force_density"];
738 }
739
740 if (pure_mass_.size() == 0)
741 pure_mass_assembler_->assemble(mesh_->is_volume(), space_.n_bases, space_.basis_list(), space_.geometry_basis_list(), pure_mass_ass_vals_cache_, 0, pure_mass_, true);
742
743 const int ndof = space_.n_bases * mesh_->dimension();
744 solve_data.nl_problem = std::make_shared<solver::NLProblem>(
745 ndof, nullptr, t, forms, solve_data.al_form,
746 polysolve::linear::Solver::create(args["solver"]["linear"], logger()),
747 characteristic_length, characteristic_force_density, pure_mass_, mesh_->dimension());
748 solve_data.nl_problem->init(sol);
749 solve_data.nl_problem->update_quantities(t, sol);
750 // --------------------------------------------------------------------
751
752 stats.solver_info = json::array();
753 }
754
755 void NonlinearElasticVarForm::solve_tensor_nonlinear(int step, Eigen::MatrixXd &sol, const bool init_lagging)
756 {
757 assert(solve_data.nl_problem != nullptr);
758 solver::NLProblem &nl_problem = *(solve_data.nl_problem);
759
760 assert(sol.size() == rhs_.size());
761
762 if (nl_problem.uses_lagging())
763 {
764 if (init_lagging)
765 {
766 POLYFEM_SCOPED_TIMER("Initializing lagging");
767 nl_problem.init_lagging(sol);
768 }
769 logger().info("Lagging iteration 1:");
770 }
771
772 save_subsolve(0, step, sol);
773
774 std::shared_ptr<polysolve::nonlinear::Solver> nl_solver =
775 polysolve::nonlinear::Solver::create(args["solver"]["augmented_lagrangian"]["nonlinear"], args["solver"]["linear"], units.characteristic_length(), logger());
776
777 ALSolver al_solver(
778 solve_data.al_form,
779 args["solver"]["augmented_lagrangian"]["initial_weight"],
780 args["solver"]["augmented_lagrangian"]["scaling"],
781 args["solver"]["augmented_lagrangian"]["max_weight"],
782 args["solver"]["augmented_lagrangian"]["eta"],
783 [&](const Eigen::VectorXd &x) {
784 this->solve_data.update_barrier_stiffness(sol);
785 });
786
787 al_solver.post_subsolve = [&](const double al_weight) {
788 stats.solver_info.push_back(
789 {{"type", al_weight > 0 ? "al" : "rc"},
790 {"t", step},
791 {"info", nl_solver->info()}});
792 if (al_weight > 0)
793 stats.solver_info.back()["weight"] = al_weight;
794 save_subsolve(stats.solver_info.size(), step, sol);
795 };
796
797 Eigen::MatrixXd prev_sol = sol;
798 al_solver.solve_al(nl_problem, sol,
799 args["solver"]["augmented_lagrangian"]["nonlinear"], args["solver"]["linear"], units.characteristic_length());
800
801 al_solver.solve_reduced(nl_problem, sol,
802 args["solver"]["nonlinear"], args["solver"]["linear"], units.characteristic_length());
803
804 if (args["space"]["advanced"]["count_flipped_els_continuous"])
805 {
806 const auto invalidList = utils::count_invalid(mesh_->dimension(), space_.basis_list(), space_.geometry_basis_list(), sol);
807 logger().debug("Flipped elements (cnt {}) : {}", invalidList.size(), invalidList);
808 }
809
810 const double lagging_tol = args["solver"]["contact"].value("friction_convergence_tol", 1e-2) * units.characteristic_length();
811
812 bool lagging_converged = !nl_problem.uses_lagging();
813 for (int lag_i = 1; !lagging_converged; lag_i++)
814 {
815 Eigen::VectorXd tmp_sol = nl_problem.full_to_reduced(sol);
816
817 nl_problem.update_lagging(tmp_sol, lag_i);
818
819 Eigen::VectorXd grad;
820 nl_problem.gradient(tmp_sol, grad);
821 const double delta_x_norm = (prev_sol - sol).lpNorm<Eigen::Infinity>();
822 logger().debug("Lagging convergence grad_norm={:g} tol={:g} (||Δx||={:g})", grad.norm(), lagging_tol, delta_x_norm);
823 if (grad.norm() <= lagging_tol)
824 {
825 logger().info(
826 "Lagging converged in {:d} iteration(s) (grad_norm={:g} tol={:g})",
827 lag_i, grad.norm(), lagging_tol);
828 lagging_converged = true;
829 break;
830 }
831
832 if (delta_x_norm <= 1e-12)
833 {
834 logger().warn(
835 "Lagging produced tiny update between iterations {:d} and {:d} (grad_norm={:g} grad_tol={:g} ||Δx||={:g} Δx_tol={:g}); stopping early",
836 lag_i - 1, lag_i, grad.norm(), lagging_tol, delta_x_norm, 1e-6);
837 lagging_converged = false;
838 break;
839 }
840
841 if (lag_i >= nl_problem.max_lagging_iterations())
842 {
843 logger().warn(
844 "Lagging failed to converge with {:d} iteration(s) (grad_norm={:g} tol={:g})",
845 lag_i, grad.norm(), lagging_tol);
846 lagging_converged = false;
847 break;
848 }
849
850 logger().info("Lagging iteration {:d}:", lag_i + 1);
851 nl_problem.init(sol);
852 solve_data.update_barrier_stiffness(sol);
853 nl_problem.normalize_forms();
854 nl_solver->minimize(nl_problem, tmp_sol);
855 nl_problem.finish();
856 prev_sol = sol;
857 sol = nl_problem.reduced_to_full(tmp_sol);
858
859 stats.solver_info.push_back(
860 {{"type", "rc"},
861 {"t", step},
862 {"lag_i", lag_i},
863 {"info", nl_solver->info()}});
864 save_subsolve(stats.solver_info.size(), step, sol);
865 }
866 }
867
868} // namespace polyfem::varform
int x
std::array< Matrix< int, 3, 3 >, 3 > space_
#define POLYFEM_SCOPED_TIMER(...)
Definition Timer.hpp:10
static double convert(const json &val, const std::string &unit_type)
Definition Units.cpp:35
static bool write(const std::string &path, const Eigen::MatrixXd &v, const Eigen::MatrixXi &e, const Eigen::MatrixXi &f)
Definition OBJWriter.cpp:18
static void extract_boundary_mesh(const mesh::Mesh &mesh, const int n_bases, const std::vector< basis::ElementBases > &bases, const std::vector< mesh::LocalBoundary > &total_local_boundary, Eigen::MatrixXd &node_positions, Eigen::MatrixXi &boundary_edges, Eigen::MatrixXi &boundary_triangles, std::vector< Eigen::Triplet< double > > &displacement_map_entries)
extracts the boundary mesh
Definition OutData.cpp:95
Abstract mesh class to capture 2d/3d conforming and non-conforming meshes.
Definition Mesh.hpp:41
int n_elements() const
utitlity to return the number of elements, cells or faces in 3d and 2d
Definition Mesh.hpp:163
int dimension() const
utily for dimension
Definition Mesh.hpp:153
const Eigen::MatrixXi & e() const
Definition Obstacle.hpp:45
const Eigen::MatrixXi & f() const
Definition Obstacle.hpp:44
const Eigen::MatrixXd & v() const
Definition Obstacle.hpp:42
const Eigen::VectorXi & codim_v() const
Definition Obstacle.hpp:43
void solve_reduced(NLProblem &nl_problem, Eigen::MatrixXd &sol, std::shared_ptr< polysolve::nonlinear::Solver > nl_solver)
Definition ALSolver.hpp:41
std::function< void(const double)> post_subsolve
Definition ALSolver.hpp:53
void solve_al(NLProblem &nl_problem, Eigen::MatrixXd &sol, std::shared_ptr< polysolve::nonlinear::Solver > nl_solver)
Definition ALSolver.hpp:29
virtual void init(const TVector &x0) override
double normalize_forms() override
TVector full_to_reduced(const TVector &full) const
virtual void gradient(const TVector &x, TVector &gradv) override
void init_lagging(const TVector &x) override
TVector reduced_to_full(const TVector &reduced) const
void update_lagging(const TVector &x, const int iter_num) override
class to store time stepping data
Definition SolveData.hpp:59
std::shared_ptr< solver::ContactForm > contact_form
std::vector< std::pair< std::string, std::shared_ptr< solver::Form > > > named_forms() const
std::shared_ptr< solver::ElasticForm > elastic_form
std::shared_ptr< time_integrator::ImplicitTimeIntegrator > time_integrator
io::OutputSpace output_space() const override
Get the output space of the variational formulation, for output purposes.
void init(const std::string &formulation, const Units &units, const json &args, const std::string &out_path) override
Initialize the variational formulation with the given parameters.
std::vector< io::OutputField > elastic_output_fields(const io::OutputSample &sample, const Eigen::MatrixXd &solution, const io::OutputFieldOptions &options, const mesh::Obstacle *obstacle, const time_integrator::ImplicitTimeIntegrator *time_integrator, const std::vector< std::pair< std::string, std::shared_ptr< solver::Form > > > &named_forms, const solver::Form *elastic_form, const solver::ContactForm *contact_form=nullptr) const
void load_mesh(const mesh::Mesh &mesh, const json &args) override
std::shared_ptr< assembler::PressureAssembler > elasticity_pressure_assembler
std::vector< io::OutputField > output_fields(const io::OutputSample &sample, const Eigen::MatrixXd &solution, const io::OutputFieldOptions &options) const override
Get the output fields of the variational formulation, for output purposes.
std::shared_ptr< assembler::ViscousDamping > damping_assembler
void init(const std::string &formulation, const Units &units, const json &args, const std::string &out_path) override
Initialize the variational formulation with the given parameters.
io::OutputSpace output_space() const override
Get the output space of the variational formulation, for output purposes.
std::shared_ptr< assembler::ViscousDampingPrev > damping_prev_assembler
void load_mesh(const mesh::Mesh &mesh, const json &args) override
bool is_contact_enabled() const override
Check if contact is enabled for the variational formulation, for output purposes.
std::vector< std::shared_ptr< solver::Form > > forms
std::shared_ptr< assembler::Problem > problem
current problem, it contains rhs and bc
Definition VarForm.hpp:190
virtual std::string name() const =0
Get the name of the variational formulation.
std::unique_ptr< mesh::Mesh > mesh_
Definition VarForm.hpp:202
bool write_matrix(const std::string &path, const Mat &mat)
Writes a matrix to a file. Determines the file format based on the path's extension.
Definition MatrixIO.cpp:42
void load_collision_proxy(const std::string &mesh_filename, const std::string &weights_filename, const Eigen::VectorXi &in_node_to_node, const json &transformation, Eigen::MatrixXd &vertices, Eigen::VectorXi &codim_vertices, Eigen::MatrixXi &edges, Eigen::MatrixXi &faces, std::vector< Eigen::Triplet< double > > &displacement_map_entries)
Load a collision proxy mesh and displacement map from files.
void build_collision_proxy(const std::vector< basis::ElementBases > &bases, const std::vector< basis::ElementBases > &geom_bases, const std::vector< LocalBoundary > &total_local_boundary, const int n_bases, const int dim, const double max_edge_length, Eigen::MatrixXd &proxy_vertices, Eigen::MatrixXi &proxy_faces, std::vector< Eigen::Triplet< double > > &displacement_map_entries, const CollisionProxyTessellation tessellation)
Obstacle read_obstacle_geometry(const Units &units, const json &geometry, const std::vector< json > &displacements, const std::vector< json > &dirichlets, const std::string &root_path, const int dim, const std::vector< std::string > &_names, const std::vector< Eigen::MatrixXd > &_vertices, const std::vector< Eigen::MatrixXi > &_cells, const bool non_conforming)
read a FEM mesh from a geometry JSON
std::string resolve_path(const std::string &path, const std::string &input_file_path, const bool only_if_exists=false)
std::vector< T > json_as_array(const json &j)
Return the value of a json object as an array.
Definition JSONUtils.hpp:38
Eigen::MatrixXd unflatten(const Eigen::VectorXd &x, int dim)
Unflatten rowwises, so every dim elements in x become a row.
void append_rows(DstMat &dst, const SrcMat &src)
std::vector< int > count_invalid(const int dim, const std::vector< basis::ElementBases > &bases, const std::vector< basis::ElementBases > &gbases, const Eigen::VectorXd &u, const unsigned max_iter)
Definition Jacobian.cpp:122
spdlog::logger & logger()
Retrieves the current logger.
Definition Logger.cpp:44
Eigen::Matrix< double, Eigen::Dynamic, 1, 0, 3, 1 > VectorNd
Definition Types.hpp:11
nlohmann::json json
Definition Common.hpp:9
Eigen::Matrix< double, 1, Eigen::Dynamic, Eigen::RowMajor, 1, 3 > RowVectorNd
Definition Types.hpp:13
void log_and_throw_error(const std::string &msg)
Definition Logger.cpp:73
std::vector< std::string > fields
const mesh::Mesh * mesh